BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0549300 Os04g0549300|AK063296
(387 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61540.1 | chr5:24744994-24747142 FORWARD LENGTH=360 477 e-135
AT3G16150.1 | chr3:5471794-5473033 FORWARD LENGTH=326 74 1e-13
AT5G08100.1 | chr5:2593242-2594586 REVERSE LENGTH=316 63 3e-10
AT4G00590.1 | chr4:252835-254880 FORWARD LENGTH=409 57 1e-08
>AT5G61540.1 | chr5:24744994-24747142 FORWARD LENGTH=360
Length = 359
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/347 (68%), Positives = 269/347 (77%), Gaps = 20/347 (5%)
Query: 41 FPVVVSTWPFREAVRAAWEVVSASGGAGCSAVDAVVAGCSACEVLRCDGTVGPGGSPDEN 100
FPVVVSTWPF EAVRAAW V G SAV+AVV GCSACE LRCDGTVGPGGSPDEN
Sbjct: 33 FPVVVSTWPFLEAVRAAWRAVDN----GSSAVEAVVEGCSACEELRCDGTVGPGGSPDEN 88
Query: 101 GETTLDALIMDGTTMEIGAVAAMRYVKDGIRAAKLVMDHTEHTLLVGEKATSFAISMGLV 160
GET +DAL+MDG TME+GAVAAMRYVKDGIRAA LVM +++HTLL GE A++FAISMGL
Sbjct: 89 GETMIDALVMDGVTMEVGAVAAMRYVKDGIRAAHLVMKYSQHTLLAGEGASAFAISMGLP 148
Query: 161 GPADLSSPESIGKWTIWRQNHCQPNFWKNVVPAGSCGPYNAIDVPSGESKASAKRVLERT 220
GP +LSSPES+ KW+ W++N CQPNF KNVVPA CGPY + SA V
Sbjct: 149 GPMNLSSPESVKKWSDWKENQCQPNFRKNVVPANDCGPY--------KPNNSAMNVFVDK 200
Query: 221 QGDICQGLFEPNNLLEPMNSRLKIVNRHNHDTISMAVIDKMGRIAAGTSTNGATFKIPGR 280
+ C+ + + + +V HNHDTISMAVID+MG IA GTSTNGAT+KIPGR
Sbjct: 201 STESCE--------MGAIEYKPPLVGPHNHDTISMAVIDRMGHIAVGTSTNGATYKIPGR 252
Query: 281 VGDGPIPGSSAYADDEVGACGATGDGDIMMRFLPCYQVVESMRRGMEPRDAAMDAILRIA 340
VGDGPI GSSAYADDEVG CGATGDGD MMRFLPCYQVVESMR+GM+P +AA DAI RIA
Sbjct: 253 VGDGPIVGSSAYADDEVGGCGATGDGDTMMRFLPCYQVVESMRQGMKPEEAAKDAISRIA 312
Query: 341 RKYPDFVGAVFAINKKGVHAGACHGWTFQYSVRNSSMQDVEVITVSP 387
RK+PDFVGAV A++K G HAGAC+GWTFQYSV+N M DV+V TV P
Sbjct: 313 RKFPDFVGAVVAVDKNGSHAGACYGWTFQYSVQNPDMNDVQVFTVLP 359
>AT3G16150.1 | chr3:5471794-5473033 FORWARD LENGTH=326
Length = 325
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 123/294 (41%), Gaps = 40/294 (13%)
Query: 92 GPGGSPDENGETTLDALIMDGTTMEIGAVAAMRYVKDGIRAAKLVMDHTEHTLLVGEKAT 151
G G + E G ++A IMDGT GAV+ + VK+ I A+LVMD + H+ L A
Sbjct: 67 GRGSALTEKGTVEMEASIMDGTKRRCGAVSGITTVKNPISLARLVMDKSPHSYLAFSGAE 126
Query: 152 SFAISMG--LVGPADLSSPESIGKWTIWRQNHCQPNFWKNVVPAGSCGPYNAIDVPSGES 209
FA G +V + +++G + ++ + +P C A D P
Sbjct: 127 DFARKQGVEIVDNEYFVTDDNVGMLKLAKE--ANSILFDYRIPPMGCAGAAATDSP---- 180
Query: 210 KASAKRVLERTQGDICQGLFEPNNLLEPMNSRLKIVNRHNHDTISMAVIDKMGRIAAGTS 269
+ N L P ++ + +T+ V+D G AAGTS
Sbjct: 181 -------------------IQMNGL--P-------ISIYAPETVGCVVVDGKGHCAAGTS 212
Query: 270 TNGATFKIPGRVGDGPIPGSSAYADDEVGACGATGDGDIMMRFLPCYQVVESMR-RGMEP 328
T G K+ GR+GD P+ G+ YA + G TG+G+ ++R V M +G+
Sbjct: 213 TGGLMNKMMGRIGDSPLIGAGTYASEFCGV-SCTGEGEAIIRATLARDVSAVMEYKGLNL 271
Query: 329 RDAAMDAILRIARKYPDFVGAVFAINKKGVHAGACHGWTFQYSVRNSSMQDVEV 382
++ A+D +++ R F G + NK V G F+ +V +
Sbjct: 272 QE-AVDYVIK-HRLDEGFAGLIAVSNKGEVVCGFNSNGMFRGCATEDGFMEVAI 323
>AT5G08100.1 | chr5:2593242-2594586 REVERSE LENGTH=316
Length = 315
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 102/249 (40%), Gaps = 53/249 (21%)
Query: 88 DGTVGPGGSPDENGETTLDALIMDGTTMEIGAVAAMRYVKDGIRAAKLVMDHTEHTLLVG 147
D G G G ++A IMDG T GAV+ + V + I A+LVM+ T H L
Sbjct: 64 DFNAGKGSVLTAQGTVEMEASIMDGKTKRCGAVSGLTTVVNPISLARLVMEKTPHIYLAF 123
Query: 148 EKATSFAISMGL--VGPADLSSPESIGKWTIWRQ-NHCQPNFWKNVVPAGSCGPYNAIDV 204
+ A +FA + G+ V + +PE+I + ++ N Q ++ VP+ P N D
Sbjct: 124 DAAEAFARAHGVETVDSSHFITPENIARLKQAKEFNRVQLDY---TVPSPKV-PDNCGDS 179
Query: 205 PSGESKASAKRVLERTQGDICQGLFEPNNLLEPMNSRLKIVNRHNHDTISMAVIDKMGRI 264
G T+ +D G +
Sbjct: 180 QIG--------------------------------------------TVGCVAVDSAGNL 195
Query: 265 AAGTSTNGATFKIPGRVGDGPIPGSSAYADDEVGACGATGDGDIMMRFLPCYQVVESMR- 323
A+ TST G K+ GR+GD P+ G+ YA + + A ATG G+ ++R V M
Sbjct: 196 ASATSTGGYVNKMVGRIGDTPVIGAGTYA-NHLCAISATGKGEDIIRGTVARDVAALMEY 254
Query: 324 RGMEPRDAA 332
+G+ +AA
Sbjct: 255 KGLSLTEAA 263
>AT4G00590.1 | chr4:252835-254880 FORWARD LENGTH=409
Length = 408
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 130/324 (40%), Gaps = 58/324 (17%)
Query: 50 FREAVRAAWEVVSASGGAGCSAVDAVVAGCSACEVLRCDGTV--GPGGSPDENGETTLDA 107
R A AA ++ G +DAV A A +VL D + G G + E+G DA
Sbjct: 36 MRRACLAASTILRQDSG---ECIDAVSA---AIQVLEDDPSTNAGRGSNLTEDGHVECDA 89
Query: 108 LIMDGTTMEIGAVAAMRYVKDGIRAAKLVMDH--TEHTLL--------VGEKATSFAISM 157
+MDG + G V A+ V++ I+ A L++ T TLL VGE A + S
Sbjct: 90 SLMDGDSGMFGGVGAVPGVRNAIKIAALLVKEQITGSTLLGRIPPMLLVGEGARRWGKSK 149
Query: 158 GLVGPADLSSPESIGKWTIWRQNHCQPNFWKNVVPAGSCGPYNAIDVPSGESKASAKRVL 217
++ P ++ + +W + + Q +K ++ S+ AK +L
Sbjct: 150 SVLIPGTVTEAD---QWLVTERARNQWRRFKAML-----------------SEVGAKSIL 189
Query: 218 ---ERTQGDICQGLFEPNNLLEPMNSRLKIVNRHN-HDTISMAVIDKMGRIAAGTSTNGA 273
E +G E N E S + DT+ + +D G IA G+S+ G
Sbjct: 190 SAEEHPRGT------ENNETCEENVSSCAAADEDKIMDTVGVICVDNEGHIACGSSSGGI 243
Query: 274 TFKIPGRVGDGPIPGSSAYADDE--------VGACGATGDGDIMMRFLPCYQVVESMRRG 325
KI GRVG GS +A + VG C +G G+ +MR + S+
Sbjct: 244 AMKISGRVGLAATYGSGCWASSKGPFGAPFLVGCC-VSGAGEYLMRGFAARECCTSLALS 302
Query: 326 ME-PRDAAMDAILRIARKYPDFVG 348
P AAM + + + +G
Sbjct: 303 QAGPASAAMKVLRSVMHQESSKIG 326
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,736,955
Number of extensions: 320625
Number of successful extensions: 722
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 719
Number of HSP's successfully gapped: 6
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)