Os04g0546400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 family protein.
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Os04g0546400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.95 | 0.205 | 10.9 | -0.978 | 0.133 | 0.292 | -0.428 | 0.0288 | -0.341 | 23.7 | 10.05 | 1428 | -- | -- |
| 18.95 | 0.203 | 10.9 | -0.98 | 0.133 | 0.291 | -0.431 | -- | -0.34 | 23.7 | 10.04 | 1429 | -- | -- |
| 19.62 | 0.206 | 10.9 | -0.967 | 0.132 | 0.287 | -- | 0.0134 | -0.347 | 1.21 | 10.04 | 1403 | -- | -- |
| 19.61 | 0.206 | 10.9 | -0.963 | 0.137 | 0.284 | -- | -- | -0.347 | 1.21 | 10.05 | 1412 | -- | -- |
| 20.21 | 0.209 | 10.9 | -0.978 | -- | 0.355 | -- | -0.266 | -0.358 | -- | 11.18 | 1248 | -- | -- |
| 21.36 | 0.217 | 10.9 | -0.888 | 0.155 | -- | -0.352 | -- | -0.256 | 0.13 | -- | -- | -- | -- |
| 21.81 | 0.219 | 10.9 | -0.875 | 0.162 | -- | -- | -- | -0.255 | 1.16 | -- | -- | -- | -- |
| 20.29 | 0.21 | 10.9 | -0.907 | -- | 0.29 | -- | -- | -0.314 | -- | 14.79 | 1275 | -- | -- |
| 35.06 | 0.276 | 10.9 | -- | 0.2 | 0.489 | -- | -- | -0.313 | 2.01 | 19.98 | 29432 | -- | -- |
| 23.43 | 0.226 | 10.9 | -0.869 | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
| 41.99 | 0.303 | 10.9 | -- | 0.148 | -- | -- | -- | -0.158 | 0.924 | -- | -- | -- | -- |
| 31.48 | 0.261 | 10.8 | -- | -- | 0.399 | -- | -- | 0.0274 | -- | 59.96 | 45266 | -- | -- |
| 43.35 | 0.307 | 10.9 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.75 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 3 | 17.78 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 4 |
| 14 | 17.99 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 17 | 18.01 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 8 | 6 |
| 26 | 18.10 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 3 |
| 27 | 18.10 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 54 | 18.20 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 57 | 18.20 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 79 | 18.29 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 14 | 18 |
| 86 | 18.30 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 11 |
| 88 | 18.31 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 92 | 18.32 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 94 | 18.33 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 115 | 18.39 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 150 | 18.48 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 152 | 18.48 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 156 | 18.50 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 157 | 18.51 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 161 | 18.51 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 177 | 18.53 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 211 | 18.57 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 219 | 18.58 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 220 | 18.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 229 | 18.59 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 269 | 18.61 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 288 | 18.63 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 295 | 18.64 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 305 | 18.65 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 346 | 18.68 | temperature | 15.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 389 | 18.70 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 395 | 18.71 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 396 | 18.71 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 404 | 18.71 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 423 | 18.71 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 466 | 18.72 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 497 | 18.74 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 532 | 18.75 | radiation | 10.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 535 | 18.75 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 548 | 18.75 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 611 | 18.77 | radiation | 10.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 630 | 18.78 | radiation | 10.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 631 | 18.78 | wind | 3.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 634 | 18.78 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 640 | 18.78 | wind | 5.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 654 | 18.78 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 677 | 18.79 | humidity | 90.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 696 | 18.80 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 736 | 18.82 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 18 |
| 748 | 18.82 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 750 | 18.83 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 800 | 18.84 | humidity | 80.0 | 720 | < th | dose independent | rect. | 14 | 8 |
| 803 | 18.84 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 821 | 18.85 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 828 | 18.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 836 | 18.86 | humidity | 80.0 | 720 | < th | dose independent | sin | 15 | NA |
| 870 | 18.87 | humidity | 80.0 | 720 | < th | dose independent | rect. | 13 | 18 |
| 897 | 18.88 | humidity | 80.0 | 720 | < th | dose independent | rect. | 13 | 14 |
| 899 | 18.88 | temperature | 25.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 900 | 18.88 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 916 | 18.89 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 918 | 18.89 | wind | 1.0 | 30 | < th | dose independent | rect. | 3 | 9 |
| 930 | 18.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 938 | 18.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 950 | 18.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 962 | 18.90 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 14 |