Os04g0543600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter I family protein.
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Os04g0543600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter I family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.36 | 0.603 | 1.69 | -2.47 | 0.0289 | 135 | 0.596 | 284 | 0.000744 | 18.7 | 15 | 90 | -- | -- |
| 174.11 | 0.619 | 2.87 | -0.0976 | 0.00711 | 0.133 | -0.674 | -- | -0.0215 | 8.23 | 14.55 | 561 | -- | -- |
| 168.2 | 0.604 | 1.69 | -2.47 | 0.045 | 135 | -- | 284 | 0.00298 | 15.7 | 15.01 | 89 | -- | -- |
| 175.2 | 0.621 | 2.87 | -0.117 | 0.0696 | 0.202 | -- | -- | -0.0201 | 14.2 | 15.01 | 89 | -- | -- |
| 168.3 | 0.604 | 1.68 | -2.5 | -- | 135 | -- | 284 | 0.00284 | -- | 15.03 | 93 | -- | -- |
| 174.14 | 0.619 | 2.87 | -0.0918 | 0.0105 | -- | -0.68 | -- | -0.0202 | 8.34 | -- | -- | -- | -- |
| 175.28 | 0.62 | 2.87 | -0.109 | 0.0725 | -- | -- | -- | -0.0181 | 14.1 | -- | -- | -- | -- |
| 172.05 | 0.611 | 2.84 | 0.0716 | -- | -0.701 | -- | -- | 0.0295 | -- | 17.1 | 351 | -- | -- |
| 172.39 | 0.612 | 2.87 | -- | 0.102 | -0.549 | -- | -- | -0.0206 | 10.8 | 17.05 | 351 | -- | -- |
| 175.59 | 0.619 | 2.87 | -0.112 | -- | -- | -- | -- | -0.0198 | -- | -- | -- | -- | -- |
| 175.59 | 0.62 | 2.86 | -- | 0.0746 | -- | -- | -- | -0.00591 | 14.1 | -- | -- | -- | -- |
| 171.47 | 0.61 | 2.86 | -- | -- | -0.904 | -- | -- | 0.0118 | -- | 17.05 | 351 | -- | -- |
| 175.93 | 0.619 | 2.86 | -- | -- | -- | -- | -- | -0.00734 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.75 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 4 | 154.44 | temperature | 25 | 30 | > th | dose dependent | rect. | 22 | 2 |
| 22 | 157.24 | humidity | 60 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 32 | 158.20 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 33 | 158.34 | humidity | 60 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 34 | 158.37 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 35 | 158.44 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 37 | 158.47 | humidity | 60 | 90 | < th | dose independent | rect. | 17 | 16 |
| 38 | 158.47 | humidity | 60 | 10 | < th | dose independent | rect. | 17 | 18 |
| 52 | 158.60 | humidity | 70 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 81 | 158.65 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 112 | 158.69 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 115 | 158.70 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 132 | 158.70 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 195 | 158.71 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 325 | 158.76 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 328 | 158.79 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 335 | 158.89 | wind | 1 | 10 | < th | dose independent | rect. | 3 | 7 |
| 354 | 159.00 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 385 | 159.13 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 399 | 159.14 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 409 | 159.18 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 501 | 159.53 | wind | 1 | 10 | < th | dose dependent | rect. | 3 | 7 |
| 531 | 159.78 | wind | 1 | 10 | < th | dose dependent | sin | 0 | NA |
| 552 | 159.91 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 9 |
| 571 | 159.96 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 7 |
| 614 | 160.19 | wind | 1 | 10 | < th | dose independent | sin | 23 | NA |
| 625 | 160.43 | wind | 1 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 631 | 160.44 | wind | 1 | 10 | < th | dose independent | rect. | 3 | 15 |
| 636 | 160.46 | wind | 1 | 10 | < th | dose independent | rect. | 3 | 13 |
| 744 | 161.21 | humidity | 90 | 30 | > th | dose dependent | rect. | 11 | 9 |
| 807 | 161.42 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 815 | 161.46 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 834 | 161.70 | wind | 1 | 10 | > th | dose independent | sin | 23 | NA |
| 895 | 162.00 | humidity | 60 | 10 | < th | dose independent | sin | 10 | NA |
| 915 | 162.02 | humidity | 90 | 30 | > th | dose independent | rect. | 11 | 10 |
| 924 | 162.06 | humidity | 90 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 932 | 162.15 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |