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Os04g0542900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0165) R2 : 0.601
β1 : -0.901 (0.0602) R2dD : 0.203 R2D : 0.181
β2 : 0.867 (0.0405) R2dC : 0.403 R2C : 0.396
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.166 (0.0351) R2dN8 : 0.0261 R2N8 : -0.00767
σ : 0.309
deviance : 43.63
__
_____
C
peak time of C : 9.31
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39 0.293 12 -0.956 0.665 -0.554 0.22 0.14 -0.208 6.16 0.01435 97 -- --
39.07 0.291 12 -0.957 0.668 -0.55 0.222 -- -0.204 6.19 0.03 100 -- --
39.04 0.291 12 -0.947 0.664 -0.532 -- 0.118 -0.209 6.32 0.0002927 104 -- --
39.11 0.291 12 -0.965 0.679 -0.579 -- -- -0.215 6.04 1.231e-06 107 -- --
55.89 0.35 12 -0.939 -- -0.533 -- 0.271 -0.199 -- 0.0002927 104 -- --
43.62 0.31 12 -0.9 0.867 -- -0.0486 -- -0.166 9.31 -- -- -- --
43.63 0.309 12 -0.901 0.867 -- -- -- -0.166 9.31 -- -- -- --
56.28 0.349 12 -0.931 -- -0.538 -- -- -0.171 -- 0.04 13 -- --
63.11 0.37 12 -- 0.676 -0.578 -- -- -0.145 6.16 0.06 123 -- --
87.45 0.437 12 -0.906 -- -- -- -- -0.162 -- -- -- -- --
65.05 0.377 12 -- 0.867 -- -- -- -0.0654 9.38 -- -- -- --
79.13 0.416 12 -- -- -0.521 -- -- -0.092 -- 0.06 123 -- --
109.08 0.487 12 -- -- -- -- -- -0.0617 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.39 wind 7.0 270 < th dose independent rect. 7 8
2 34.01 wind 7.0 270 < th dose independent rect. 7 20
3 34.15 humidity 50.0 270 > th dose independent rect. 7 8
8 34.47 atmosphere 995.0 270 > th dose independent rect. 15 16
9 34.48 temperature 10.0 270 > th dose dependent rect. 7 7
10 34.54 radiation 30.0 270 < th dose independent rect. 15 16
12 34.62 wind 7.0 270 < th dose independent rect. 8 18
14 34.64 temperature 10.0 270 > th dose independent rect. 7 8
15 34.64 atmosphere 1015.0 270 < th dose independent rect. 7 8
16 34.64 temperature 10.0 270 > th dose independent rect. 15 16
18 34.64 radiation 1.0 90 < th dose dependent sin 11 NA
19 34.65 wind 1.0 270 > th dose independent rect. 7 8
21 34.72 precipitation 0.1 270 < th dose independent rect. 7 8
22 34.72 precipitation 0.1 270 < th dose dependent rect. 7 8
24 34.76 atmosphere 995.0 270 > th dose independent rect. 7 8
27 34.77 radiation 40.0 270 < th dose dependent rect. 15 16
28 34.79 precipitation 0.1 270 < th dose independent rect. 3 4
29 34.79 precipitation 0.1 270 < th dose dependent rect. 3 4
30 34.80 radiation 1.0 90 > th dose independent sin 11 NA
31 34.80 temperature 10.0 90 > th dose dependent rect. 9 19
35 34.86 precipitation 0.1 270 < th dose independent rect. 15 16
36 34.86 precipitation 0.1 270 < th dose dependent rect. 15 16
37 34.91 radiation 1.0 90 > th dose independent rect. 17 16
38 34.93 atmosphere 995.0 270 > th dose dependent rect. 3 4
39 34.94 wind 7.0 270 < th dose independent rect. 19 8
40 34.94 precipitation 0.1 270 < th dose independent rect. 3 16
42 34.94 precipitation 0.1 270 < th dose dependent rect. 3 16
43 34.95 radiation 1.0 90 < th dose independent sin 11 NA
44 34.99 wind 7.0 270 < th dose independent rect. 3 4
48 35.01 precipitation 0.1 270 < th dose independent rect. 7 20
49 35.01 precipitation 0.1 270 < th dose dependent rect. 7 20
50 35.02 temperature 10.0 270 > th dose independent rect. 19 8
51 35.02 temperature 30.0 270 < th dose independent rect. 19 8
52 35.02 humidity 50.0 270 > th dose independent rect. 19 8
54 35.02 atmosphere 995.0 270 > th dose independent rect. 19 8
55 35.02 radiation 1.0 270 < th dose independent rect. 19 8
60 35.02 precipitation 0.1 270 < th dose independent rect. 19 8
61 35.02 temperature 10.0 270 > th dose independent rect. 3 16
62 35.02 atmosphere 1015.0 270 < th dose independent rect. 3 16
63 35.02 radiation 1.0 270 < th dose dependent rect. 19 8
68 35.02 precipitation 0.1 270 < th dose dependent rect. 19 8
71 35.04 temperature 10.0 270 > th dose independent rect. 3 4
73 35.04 temperature 30.0 270 < th dose independent rect. 3 4
74 35.04 humidity 50.0 270 > th dose independent rect. 3 4
76 35.04 atmosphere 995.0 270 > th dose independent rect. 3 4
77 35.04 atmosphere 1015.0 270 < th dose independent rect. 3 4
78 35.04 radiation 30.0 270 < th dose independent rect. 3 4
81 35.04 temperature 10.0 270 > th dose independent rect. 7 20
89 35.09 humidity 50.0 270 > th dose independent rect. 7 20
90 35.10 atmosphere 995.0 270 > th dose independent rect. 3 16
91 35.11 wind 9.0 270 < th dose independent rect. 15 16
93 35.13 radiation 40.0 270 < th dose dependent rect. 3 4
103 35.23 temperature 10.0 270 > th dose dependent rect. 19 8
108 35.32 radiation 1.0 270 > th dose independent rect. 7 8
122 35.41 atmosphere 1000.0 270 > th dose dependent rect. 4 2
125 35.42 radiation 1.0 90 < th dose dependent rect. 20 17
126 35.42 radiation 1.0 90 < th dose dependent rect. 20 19
129 35.43 radiation 1.0 90 < th dose dependent rect. 20 14
136 35.45 radiation 1.0 90 < th dose dependent rect. 20 12
139 35.46 precipitation 0.1 270 < th dose independent rect. 2 6
142 35.46 precipitation 0.1 270 < th dose dependent rect. 2 6
154 35.49 temperature 10.0 270 > th dose dependent rect. 3 4
157 35.50 wind 1.0 270 > th dose independent rect. 3 4
166 35.52 radiation 20.0 270 < th dose independent rect. 2 7
170 35.52 wind 9.0 270 < th dose dependent rect. 7 8
179 35.54 humidity 50.0 270 > th dose dependent rect. 3 4
181 35.54 temperature 10.0 10 > th dose dependent rect. 9 20
195 35.57 temperature 10.0 270 > th dose dependent rect. 19 19
215 35.64 wind 9.0 270 < th dose dependent rect. 3 4
220 35.66 wind 7.0 270 < th dose independent rect. 2 6
221 35.66 precipitation 0.1 270 < th dose independent rect. 8 18
224 35.66 precipitation 0.1 270 < th dose dependent rect. 8 18
226 35.67 temperature 10.0 90 > th dose independent rect. 9 8
227 35.67 atmosphere 1015.0 90 < th dose independent rect. 9 8
233 35.68 humidity 50.0 270 > th dose independent rect. 8 18
239 35.69 temperature 10.0 270 > th dose dependent rect. 20 17
242 35.71 temperature 10.0 270 > th dose independent rect. 2 6
244 35.71 temperature 30.0 270 < th dose independent rect. 2 6
245 35.71 humidity 50.0 270 > th dose independent rect. 2 6
247 35.71 atmosphere 995.0 270 > th dose independent rect. 2 6
248 35.71 atmosphere 1015.0 270 < th dose independent rect. 2 6
249 35.71 radiation 1.0 90 < th dose independent rect. 20 11
250 35.71 temperature 10.0 270 > th dose independent rect. 8 18
264 35.72 radiation 40.0 270 < th dose independent rect. 2 6
287 35.74 humidity 50.0 270 > th dose dependent rect. 19 8
299 35.77 radiation 1.0 90 > th dose independent rect. 4 5
320 35.80 radiation 1.0 90 < th dose independent rect. 20 19
328 35.81 radiation 1.0 90 < th dose independent rect. 20 15
329 35.81 radiation 1.0 90 < th dose independent rect. 20 17
333 35.81 temperature 10.0 270 > th dose dependent rect. 18 21
340 35.83 radiation 10.0 10 < th dose dependent rect. 20 10
349 35.84 wind 9.0 270 < th dose dependent rect. 7 20
350 35.85 wind 1.0 90 > th dose independent rect. 9 8
351 35.85 precipitation 0.1 90 < th dose independent rect. 9 8
354 35.85 precipitation 0.1 90 < th dose dependent rect. 9 8
368 35.88 atmosphere 1005.0 270 > th dose independent rect. 3 4
395 35.90 humidity 50.0 90 > th dose independent rect. 17 16
397 35.91 atmosphere 1015.0 270 < th dose independent rect. 19 8
408 35.93 temperature 10.0 270 > th dose dependent rect. 4 2
433 35.94 wind 9.0 270 < th dose dependent rect. 19 8
441 35.95 wind 1.0 270 > th dose independent rect. 15 16
455 35.97 wind 9.0 270 < th dose independent rect. 3 16
458 35.99 atmosphere 1005.0 270 > th dose independent rect. 4 2
461 35.99 atmosphere 1015.0 270 < th dose independent rect. 7 20
551 36.11 atmosphere 995.0 90 > th dose independent rect. 9 8
621 36.20 wind 9.0 270 < th dose dependent rect. 8 18
625 36.21 atmosphere 1000.0 10 > th dose dependent rect. 5 4
665 36.28 temperature 30.0 10 < th dose independent rect. 5 5
680 36.29 radiation 40.0 270 < th dose dependent rect. 3 16
691 36.31 wind 7.0 270 < th dose independent rect. 21 16
772 36.36 atmosphere 1015.0 270 < th dose independent rect. 8 18
775 36.37 wind 1.0 270 > th dose independent rect. 7 20
776 36.37 atmosphere 995.0 270 > th dose independent rect. 7 20
795 36.39 atmosphere 995.0 90 > th dose independent rect. 9 19
806 36.41 radiation 1.0 90 > th dose independent rect. 9 8
814 36.42 temperature 10.0 10 > th dose dependent rect. 5 4
817 36.43 wind 1.0 270 > th dose independent rect. 8 18
830 36.45 wind 9.0 10 < th dose independent rect. 9 20
844 36.47 atmosphere 1005.0 10 > th dose independent rect. 5 4
873 36.50 radiation 40.0 90 < th dose independent rect. 4 16
878 36.50 temperature 10.0 10 > th dose dependent rect. 20 9
940 36.56 wind 7.0 270 < th dose independent rect. 20 18
942 36.56 radiation 1.0 90 > th dose dependent rect. 18 13
997 36.61 wind 9.0 10 < th dose independent rect. 20 9