BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0542900 Os04g0542900|AK068610
         (519 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17100.2  | chr4:9610164-9612513 REVERSE LENGTH=438            458   e-129

>AT4G17100.2 | chr4:9610164-9612513 REVERSE LENGTH=438
          Length = 437

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/332 (65%), Positives = 272/332 (81%), Gaps = 9/332 (2%)

Query: 190 ERNDGGWQTVGEKK--HHGRPQQSEAWNAYRRPPSEQQYCEDAGQIHHGLNVEPTREELN 247
           E NDG W+TVG+KK        Q E W  Y+RP SEQ Y +   ++    N+EP++ EL+
Sbjct: 113 EENDG-WETVGKKKPARQSHKVQKEQWQDYKRPASEQHYSD---EVETYGNLEPSQLELS 168

Query: 248 SLSRACSRLWELDMNRLTPGKDYRIECGEGKKVYQKGDMASETLFSWLGDDVLRKPTYSR 307
            LS AC++LWELD+NRL PG+DY+I+CG+GK+V+++ DMA   LFSW+ ++V RKPT++R
Sbjct: 169 GLSEACNKLWELDLNRLVPGRDYQIDCGDGKRVHERADMAEGLLFSWVSEEVSRKPTFAR 228

Query: 308 FCALLDNYNPHQGYKEVVTQQDKHEEVAFIEEIARTAPIKYLHRYLVLKGVASQDYEDFK 367
           FC+LLDNYNP++GYKEVVT++++ E+ AFIEEI+RT+ IKYLHRYLVLK VA   Y +FK
Sbjct: 229 FCSLLDNYNPNEGYKEVVTEEERQEQAAFIEEISRTSVIKYLHRYLVLKDVAPGSYLEFK 288

Query: 368 RMLTSLWFDLYGRGGXXXXXXAFEHVFVGEIKGRRGQGENEVSGFHNWIQFYLEEANGNV 427
           RMLTSLWFDLYGRGG      AFEHVFVGEIK   G+   +VSGFHNW+QFYLEEA G V
Sbjct: 289 RMLTSLWFDLYGRGGTSGSSSAFEHVFVGEIKQSGGE---QVSGFHNWLQFYLEEAKGTV 345

Query: 428 DYQGYIFPRRRGESPDSETQLLTIQFEWHGVLKSVSSTLIGVSPEFEVALYTLCFFMGGE 487
           DYQGYIFPRRRGE PDSETQLLTIQFEW+GVLKSVSSTL+GVSPEFE+ALYT+CFFMG E
Sbjct: 346 DYQGYIFPRRRGEIPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTMCFFMGTE 405

Query: 488 DNRVEIGPYGVNIKCYRMGNSKIGSAFPIADN 519
           DN +++GPY VN+KCYR+GN++IGSAFPIA++
Sbjct: 406 DNHIQLGPYNVNVKCYRLGNNRIGSAFPIAES 437



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,369,211
Number of extensions: 424382
Number of successful extensions: 924
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 922
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 416
Effective length of database: 8,282,721
Effective search space: 3445611936
Effective search space used: 3445611936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)