Os04g0539000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lambda integrase-like, N-terminal domain containing protein.
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Os04g0539000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lambda integrase-like, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.56 | 0.386 | 11.7 | -1.24 | 1.2 | 0.326 | -0.329 | 1.93 | -0.886 | 2.83 | 1004 | 3881 | -- | -- |
| 69.59 | 0.389 | 11.7 | -1.34 | 1.21 | 0.527 | -0.317 | -- | -0.882 | 2.82 | 1000 | 5033 | -- | -- |
| 67.91 | 0.384 | 11.7 | -1.23 | 1.2 | 0.331 | -- | 1.93 | -0.885 | 2.83 | 1004 | 4024 | -- | -- |
| 69.93 | 0.389 | 11.7 | -1.34 | 1.2 | 0.52 | -- | -- | -0.883 | 2.82 | 1000 | 5018 | -- | -- |
| 151.13 | 0.576 | 11.7 | -1.18 | -- | -0.107 | -- | 1.63 | -0.95 | -- | 1004 | 4024 | -- | -- |
| 77.17 | 0.412 | 11.7 | -1.25 | 1.2 | -- | -0.287 | -- | -0.935 | 2.81 | -- | -- | -- | -- |
| 77.46 | 0.412 | 11.7 | -1.24 | 1.2 | -- | -- | -- | -0.933 | 2.82 | -- | -- | -- | -- |
| 154.01 | 0.578 | 11.7 | -1.3 | -- | 0.521 | -- | -- | -0.859 | -- | 1000 | 5030 | -- | -- |
| 115.43 | 0.5 | 11.6 | -- | 1.18 | 0.428 | -- | -- | -0.753 | 2.78 | 1002 | 5049 | -- | -- |
| 161.27 | 0.593 | 11.7 | -1.19 | -- | -- | -- | -- | -0.902 | -- | -- | -- | -- | -- |
| 118.28 | 0.509 | 11.6 | -- | 1.18 | -- | -- | -- | -0.794 | 2.81 | -- | -- | -- | -- |
| 195.49 | 0.651 | 11.6 | -- | -- | 0.356 | -- | -- | -0.713 | -- | 1003 | 3560 | -- | -- |
| 198.83 | 0.658 | 11.6 | -- | -- | -- | -- | -- | -0.77 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.40 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 2 | 65.83 | humidity | 80 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 4 | 66.17 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 1 | 18 |
| 10 | 66.36 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 11 | 66.36 | wind | 1 | 4320 | < th | dose dependent | rect. | 19 | 2 |
| 13 | 66.40 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 15 | 66.57 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 16 | 66.58 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 19 | 66.59 | humidity | 80 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 30 | 66.72 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 39 | 66.82 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 47 | 66.91 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 16 |
| 51 | 66.97 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 23 | 18 |
| 55 | 66.99 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 58 | 67.00 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 64 | 67.02 | humidity | 90 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 67 | 67.03 | humidity | 90 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 68 | 67.04 | humidity | 90 | 270 | > th | dose dependent | sin | 11 | NA |
| 78 | 67.09 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 16 |
| 86 | 67.12 | humidity | 90 | 270 | > th | dose dependent | rect. | 22 | 18 |
| 90 | 67.14 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 103 | 67.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 118 | 67.23 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 121 | 67.24 | atmosphere | 1005 | 4320 | < th | dose independent | sin | 12 | NA |
| 134 | 67.26 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 144 | 67.28 | humidity | 90 | 270 | < th | dose independent | rect. | 18 | 15 |
| 158 | 67.31 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 20 | 13 |
| 178 | 67.35 | humidity | 90 | 270 | > th | dose dependent | rect. | 22 | 21 |
| 182 | 67.37 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 195 | 67.38 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 196 | 67.39 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 15 | 11 |
| 226 | 67.42 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 229 | 67.42 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 238 | 67.44 | atmosphere | 1005 | 4320 | > th | dose independent | sin | 11 | NA |
| 278 | 67.48 | humidity | 90 | 270 | > th | dose independent | rect. | 22 | 10 |
| 301 | 67.50 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 307 | 67.51 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 319 | 67.51 | humidity | 90 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 343 | 67.55 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 363 | 67.56 | humidity | 90 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 389 | 67.59 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 444 | 67.63 | atmosphere | 1005 | 4320 | < th | dose dependent | sin | 7 | NA |
| 458 | 67.64 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 15 | 12 |
| 481 | 67.65 | humidity | 90 | 270 | > th | dose independent | rect. | 22 | 6 |
| 514 | 67.67 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 579 | 67.69 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 580 | 67.69 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 23 |
| 599 | 67.71 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 625 | 67.72 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 20 | 20 |
| 640 | 67.73 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 692 | 67.76 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 715 | 67.76 | humidity | 90 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 717 | 67.77 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 757 | 67.78 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 13 | 21 |
| 760 | 67.78 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 763 | 67.79 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 772 | 67.79 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 5 | 21 |
| 779 | 67.79 | atmosphere | 1005 | 10 | < th | dose dependent | no | NA | NA |
| 816 | 67.80 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 13 | 18 |
| 831 | 67.80 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 845 | 67.81 | atmosphere | 1005 | 4320 | < th | dose dependent | no | NA | NA |
| 856 | 67.81 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 8 | 22 |
| 868 | 67.82 | atmosphere | 1005 | 4320 | < th | dose independent | no | NA | NA |
| 900 | 67.83 | wind | 1 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 931 | 67.83 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 941 | 67.84 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 948 | 67.84 | humidity | 90 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 953 | 67.84 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 5 | 23 |