BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0539000 Os04g0539000|AK105343
         (220 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37925.1  | chr4:17830748-17831485 REVERSE LENGTH=218          218   2e-57

>AT4G37925.1 | chr4:17830748-17831485 REVERSE LENGTH=218
          Length = 217

 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 122/143 (85%), Gaps = 6/143 (4%)

Query: 79  QPLPVQPL-----AESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLL 133
           QP P++P+      +SK M  ++GGQWLS  TRH+RIYAAYI+PET  FDQ+QMDKLTL+
Sbjct: 64  QPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLI 122

Query: 134 LDPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFIRKLLYDGEIKY 193
           LDPT+EFVW DE+C KVY  FQ+LVDHYEGA L+EYTLRLIGSD+EH+IRK+L+DGEI+Y
Sbjct: 123 LDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDVEHYIRKMLFDGEIQY 182

Query: 194 NMMSRVLNFSMGKPRIKFNSSQI 216
           NM +RVLNFSMGKPR++FN+S I
Sbjct: 183 NMDARVLNFSMGKPRVQFNTSNI 205



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,845,739
Number of extensions: 139798
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)