Os04g0531300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dihydrouridine synthase, DuS family protein.
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Os04g0531300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dihydrouridine synthase, DuS family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.83 | 0.269 | 9.03 | -0.921 | 0.445 | 0.348 | 0.538 | -0.811 | -0.216 | 10.9 | 19.14 | 1459 | -- | -- |
| 33.38 | 0.269 | 9.01 | -0.699 | 0.446 | 0.385 | 0.563 | -- | -0.155 | 10.9 | 15.9 | 1443 | -- | -- |
| 33.82 | 0.271 | 9.03 | -0.916 | 0.477 | 0.361 | -- | -1.03 | -0.21 | 10.8 | 17.88 | 1147 | -- | -- |
| 34.49 | 0.275 | 9.01 | -0.65 | 0.371 | 0.473 | -- | -- | -0.155 | 9.12 | 17.88 | 1147 | -- | -- |
| 41.73 | 0.303 | 9.01 | -0.567 | -- | 0.567 | -- | 0.668 | -0.14 | -- | 17.68 | 1537 | -- | -- |
| 36.27 | 0.282 | 8.99 | -0.569 | 0.435 | -- | 0.539 | -- | -0.0781 | 10.8 | -- | -- | -- | -- |
| 37.44 | 0.287 | 8.99 | -0.548 | 0.435 | -- | -- | -- | -0.0771 | 10.5 | -- | -- | -- | -- |
| 42.2 | 0.304 | 9.02 | -0.675 | -- | 0.595 | -- | -- | -0.17 | -- | 17.49 | 1571 | -- | -- |
| 44.62 | 0.313 | 8.98 | -- | 0.4 | 0.219 | -- | -- | -0.0477 | 10 | 18.69 | 1479 | -- | -- |
| 49.07 | 0.327 | 9 | -0.556 | -- | -- | -- | -- | -0.0791 | -- | -- | -- | -- | -- |
| 45.36 | 0.315 | 8.97 | -- | 0.439 | -- | -- | -- | -0.0161 | 10.6 | -- | -- | -- | -- |
| 52.18 | 0.336 | 8.96 | -- | -- | -0.363 | -- | -- | 0.0937 | -- | 11.37 | 47026 | -- | -- |
| 57.22 | 0.353 | 8.98 | -- | -- | -- | -- | -- | -0.0174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 3 | 31.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 4 | 31.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 9 | 32.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 18 | 32.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 24 | 32.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 34 | 32.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 37 | 32.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 45 | 32.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 231 | 32.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 233 | 32.37 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 297 | 32.41 | temperature | 15 | 1440 | > th | dose dependent | sin | 15 | NA |
| 589 | 32.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 686 | 32.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 717 | 32.65 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 792 | 32.69 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 815 | 32.70 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 841 | 32.71 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 862 | 32.72 | wind | 1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 871 | 32.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 875 | 32.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 878 | 32.73 | temperature | 30 | 90 | < th | dose dependent | sin | 17 | NA |
| 922 | 32.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 935 | 32.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 940 | 32.76 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 983 | 32.77 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 1 |