BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0531300 Os04g0531300|AK072647
         (319 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49640.1  | chr3:18400480-18402809 REVERSE LENGTH=330          522   e-149
AT5G67220.1  | chr5:26820276-26821926 REVERSE LENGTH=424          127   6e-30
AT4G38890.1  | chr4:18135909-18139100 REVERSE LENGTH=692          108   5e-24

>AT3G49640.1 | chr3:18400480-18402809 REVERSE LENGTH=330
          Length = 329

 Score =  522 bits (1345), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 245/317 (77%), Positives = 281/317 (88%)

Query: 1   MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLE 60
           M+Y++KLVLAPMVRVGTL FR+LAAEYGADITYGEEIIDHK +KCER  N + GT++F+E
Sbjct: 1   MDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVE 60

Query: 61  RGTDTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGM 120
           +GTD VVF TC +E+ RVVFQMGTSDAVRALKA+++VCNDVA IDINMGCPK+FS+ GGM
Sbjct: 61  KGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGM 120

Query: 121 GAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRVEKIGVPALAVHGRK 180
           GAALLSKPELIHDIL TL+RNLD  VTCKIRLL +  DTVELARR+EK+GVPALAVHGRK
Sbjct: 121 GAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRK 180

Query: 181 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAASVMVARGAMWNAS 240
           + DRPRDPAKWDEIADVV+ALSIPVIANGDV EY+DF RIK ATGAASVMVARGAMWNAS
Sbjct: 181 IADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNAS 240

Query: 241 IFCPKGKTPWEDVKREYVRKSILWDNDLKSTKQTIKEMIMHYSCLEFPEGKGVNKCDTIA 300
           IF PKGK+ WEDVK++Y+RKSILW+ND+KSTK TIKEMI H+SCLE PEGK +NK DT+ 
Sbjct: 241 IFSPKGKSHWEDVKKKYLRKSILWNNDVKSTKYTIKEMIAHHSCLELPEGKSINKADTLE 300

Query: 301 DLAKLYGEEYYNFVLSN 317
           DLA+LY  E Y + + N
Sbjct: 301 DLARLYDLEDYFWTVKN 317



>AT5G67220.1 | chr5:26820276-26821926 REVERSE LENGTH=424
          Length = 423

 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 120/241 (49%), Gaps = 18/241 (7%)

Query: 4   RDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLERGT 63
           R K ++APMV    LPFRLL  +YGA   Y   +    F + E+  N+            
Sbjct: 87  RPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQE----------- 135

Query: 64  DTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGMGAA 123
               F TC ++R   V Q   +D    L+AA+ V      +DIN+GCP+  +  G  GA 
Sbjct: 136 ----FTTCKEDRPLFV-QFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAF 190

Query: 124 LLSKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRVEKIGVPALAVHGRK--V 181
           L+    L+  ++  L +NL+  V+CKIR+    +DT++ A+ +E  G   LAVHGR    
Sbjct: 191 LMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDE 250

Query: 182 KDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAASVMVARGAMWNASI 241
           KD  +  A W  I +V +A+ IPV+ANG+V   ED       TG   V+ A   + N + 
Sbjct: 251 KDGKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAA 310

Query: 242 F 242
           F
Sbjct: 311 F 311



>AT4G38890.1 | chr4:18135909-18139100 REVERSE LENGTH=692
          Length = 691

 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 138/303 (45%), Gaps = 33/303 (10%)

Query: 1   MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLE 60
           +++RDKL LAP+  VG LPFR L    GAD+T GE  +      C  +          L 
Sbjct: 334 IDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAM------CTNLLQGQASEWALLR 387

Query: 61  RGTDTVVF--RTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSG 118
           R +   +F  + C    D V          R ++     C  V  IDINMGCP    ++ 
Sbjct: 388 RHSSEDLFGVQICGSYPDTV---------SRVVELIDRECT-VDFIDINMGCPIDMVVNK 437

Query: 119 GMGAALLSKPELIHDILTTLRRNLDTTVTCKIR--LLNTRQDTVELARRVEKIGVPALAV 176
             G+ALL+KP  + +I+      ++T +T K+R      +     L   +   G  A+ +
Sbjct: 438 SAGSALLNKPLRMKNIVEVSSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTI 497

Query: 177 HGRKVKDRPRDPAKWDEIADVV--SALSIPVIANGDVFEYEDFKRIK-DATGAASVMVAR 233
           HGR  + R    A WD I      +  ++ VI NGDV+ Y D+ + K D    +S M+AR
Sbjct: 498 HGRSRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIAR 557

Query: 234 GAMWNASIFCP-KGKTPWE-------DVKREYVRKSIL-WDNDLKSTKQTIKEMIMHYSC 284
           GA+    IF   K +  W+       ++ +++VR  +  W +D K   +T +  ++ +  
Sbjct: 558 GALIKPWIFTEIKEQRHWDITSGERLNIMKDFVRFGLQHWGSDTKGV-ETTRHFLLEWLS 616

Query: 285 LEF 287
             F
Sbjct: 617 YTF 619



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,661,311
Number of extensions: 265226
Number of successful extensions: 670
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,392,385
Effective search space: 1846324700
Effective search space used: 1846324700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)