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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0526600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-amylase/subtilisin inhibitor (RASI).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0307) R2 : 0.0163
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.178 (0.0647) R2dN8 : 0.021 R2N8 : 0.0163
σ : 0.579
deviance : 153.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
146.06 0.568 3.14 0.077 0.328 -0.712 -0.0653 1.57 0.271 14.7 24.6 10 -- --
146.97 0.569 3.16 -0.11 0.307 -0.58 0.181 -- 0.234 14.6 23.53 11 -- --
146.07 0.567 3.14 0.0656 0.328 -0.718 -- 1.55 0.266 14.7 24.6 9 -- --
147.06 0.565 3.16 -0.103 0.305 -0.576 -- -- 0.236 14.7 23.54 10 -- --
149.87 0.57 3.15 -0.0237 -- -0.384 -- 1.21 0.222 -- 24.6 3 -- --
152.2 0.578 3.17 -0.208 0.076 -- 0.032 -- 0.156 14.3 -- -- -- --
152.2 0.578 3.17 -0.207 0.0765 -- -- -- 0.156 14.5 -- -- -- --
150.46 0.571 3.17 -0.151 -- -0.289 -- -- 0.197 -- 22.7 2 -- --
147.33 0.565 3.15 -- 0.319 -0.604 -- -- 0.251 14.7 23.5 10 -- --
152.55 0.577 3.18 -0.21 -- -- -- -- 0.154 -- -- -- -- --
153.33 0.579 3.17 -- 0.0806 -- -- -- 0.179 14.5 -- -- -- --
150.9 0.574 3.16 -- -- -0.41 -- -- 0.226 -- 15.4 15 -- --
153.72 0.579 3.17 -- -- -- -- -- 0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.34 temperature 10.0 30 > th dose dependent rect. 3 23
4 142.88 wind 7.0 10 < th dose independent rect. 3 23
7 143.30 atmosphere 1015.0 30 < th dose independent rect. 3 23
10 143.47 temperature 10.0 10 > th dose dependent rect. 17 23
11 143.49 wind 9.0 10 < th dose dependent rect. 3 23
17 143.75 temperature 25.0 30 > th dose independent rect. 17 23
18 143.81 wind 1.0 90 < th dose dependent rect. 10 1
22 144.07 atmosphere 1000.0 30 > th dose independent rect. 3 23
23 144.08 temperature 25.0 10 > th dose dependent rect. 17 23
24 144.10 wind 1.0 10 < th dose independent rect. 11 1
29 144.15 temperature 25.0 90 > th dose independent rect. 2 1
30 144.15 temperature 25.0 90 > th dose dependent rect. 2 1
34 144.20 radiation 10.0 43200 < th dose dependent rect. 3 1
35 144.21 atmosphere 1005.0 30 > th dose independent rect. 2 1
38 144.22 atmosphere 1000.0 30 > th dose dependent rect. 2 1
43 144.23 wind 9.0 1440 < th dose independent rect. 3 1
44 144.23 temperature 10.0 1440 > th dose independent rect. 3 1
47 144.23 temperature 30.0 1440 < th dose independent rect. 3 1
51 144.23 humidity 80.0 30 > th dose independent rect. 2 1
52 144.23 humidity 50.0 1440 > th dose independent rect. 3 1
61 144.23 atmosphere 995.0 1440 > th dose independent rect. 3 1
62 144.23 radiation 1.0 1440 < th dose independent rect. 3 1
82 144.23 temperature 10.0 1440 > th dose independent rect. 4 23
88 144.23 radiation 1.0 1440 < th dose dependent rect. 3 1
104 144.26 wind 9.0 30 < th dose independent rect. 2 1
105 144.26 temperature 10.0 30 > th dose independent rect. 2 1
107 144.26 temperature 30.0 30 < th dose independent rect. 2 1
108 144.26 humidity 50.0 30 > th dose independent rect. 2 1
111 144.26 atmosphere 995.0 30 > th dose independent rect. 2 1
113 144.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
115 144.26 radiation 1.0 30 < th dose independent rect. 2 1
120 144.26 precipitation 0.1 30 < th dose independent rect. 2 1
121 144.26 temperature 10.0 30 > th dose independent rect. 3 23
122 144.26 wind 3.0 30 < th dose dependent rect. 2 1
123 144.26 humidity 50.0 30 > th dose dependent rect. 2 1
127 144.26 radiation 1.0 30 < th dose dependent rect. 2 1
132 144.26 precipitation 0.1 30 < th dose dependent rect. 2 1
142 144.29 wind 5.0 30 < th dose independent rect. 2 1
145 144.31 wind 1.0 30 < th dose independent rect. 2 1
147 144.32 precipitation 0.1 30 < th dose independent rect. 3 23
148 144.32 atmosphere 1015.0 30 < th dose dependent rect. 2 1
150 144.32 precipitation 0.1 30 < th dose dependent rect. 3 23
156 144.36 wind 1.0 30 > th dose independent rect. 2 1
157 144.36 temperature 30.0 30 < th dose dependent rect. 2 1
166 144.46 temperature 15.0 270 > th dose dependent rect. 3 20
167 144.49 humidity 90.0 14400 > th dose dependent rect. 4 3
168 144.50 wind 7.0 10 > th dose independent rect. 16 2
170 144.51 wind 3.0 90 < th dose dependent rect. 10 15
215 144.63 wind 7.0 10 < th dose dependent rect. 10 16
234 144.88 radiation 1.0 4320 < th dose independent rect. 4 3
244 144.89 temperature 30.0 90 < th dose dependent rect. 10 17
246 144.91 radiation 1.0 4320 > th dose independent rect. 4 3
258 144.94 precipitation 0.1 4320 > th dose independent rect. 6 1
260 144.94 precipitation 0.1 4320 > th dose dependent rect. 6 1
265 144.96 wind 7.0 10 > th dose dependent rect. 16 1
277 145.14 precipitation 0.1 1440 > th dose independent rect. 8 1
278 145.14 precipitation 0.1 1440 > th dose dependent rect. 8 1
294 145.22 temperature 25.0 30 > th dose independent rect. 12 23
301 145.25 wind 1.0 90 < th dose independent rect. 10 1
304 145.26 radiation 1.0 4320 < th dose dependent rect. 3 4
305 145.26 radiation 1.0 4320 < th dose dependent rect. 21 10
327 145.32 temperature 30.0 90 < th dose dependent rect. 10 1
328 145.34 humidity 90.0 1440 > th dose independent rect. 10 1
329 145.34 wind 3.0 90 < th dose dependent rect. 6 19
334 145.35 temperature 20.0 10 > th dose dependent rect. 6 20
339 145.36 temperature 30.0 270 < th dose dependent rect. 7 20
348 145.38 humidity 90.0 14400 > th dose independent rect. 23 1
349 145.38 humidity 90.0 1440 > th dose independent rect. 10 3
375 145.46 wind 7.0 10 < th dose dependent rect. 6 20
376 145.47 wind 3.0 90 < th dose independent rect. 10 15
377 145.47 temperature 10.0 720 > th dose dependent rect. 3 2
380 145.48 temperature 20.0 720 > th dose independent rect. 3 2
381 145.48 radiation 1.0 30 > th dose dependent rect. 16 14
382 145.49 humidity 90.0 1440 > th dose dependent rect. 10 1
385 145.50 humidity 80.0 43200 < th dose independent rect. 19 1
391 145.53 temperature 30.0 90 < th dose dependent rect. 9 20
401 145.57 atmosphere 1005.0 90 > th dose independent rect. 16 1
403 145.58 wind 1.0 10 < th dose dependent rect. 11 2
407 145.59 precipitation 0.1 4320 < th dose independent rect. 6 1
408 145.59 wind 1.0 4320 < th dose dependent rect. 5 1
410 145.59 precipitation 0.1 4320 < th dose dependent rect. 6 1
425 145.61 humidity 90.0 14400 < th dose independent rect. 23 1
437 145.64 temperature 30.0 10 < th dose dependent rect. 9 21
438 145.65 humidity 70.0 43200 > th dose dependent rect. 19 1
445 145.66 wind 5.0 10 < th dose independent rect. 12 14
461 145.70 wind 7.0 30 < th dose dependent rect. 23 13
462 145.70 temperature 20.0 10 > th dose dependent rect. 3 13
468 145.71 humidity 50.0 14400 > th dose dependent rect. 5 2
479 145.74 radiation 20.0 43200 > th dose dependent rect. 16 1
481 145.74 temperature 30.0 270 < th dose dependent rect. 8 4
502 145.76 humidity 80.0 43200 > th dose independent rect. 19 1
522 145.79 wind 5.0 10 < th dose independent rect. 10 16
532 145.81 wind 9.0 30 < th dose independent rect. 17 23
547 145.83 wind 7.0 90 < th dose dependent rect. 21 15
550 145.83 temperature 30.0 10 < th dose dependent rect. 20 22
564 145.86 precipitation 0.1 270 > th dose independent rect. 8 1
576 145.86 precipitation 0.1 270 > th dose dependent rect. 8 1
581 145.87 humidity 80.0 90 > th dose independent rect. 10 3
584 145.87 atmosphere 995.0 10 > th dose dependent rect. 2 16
586 145.88 precipitation 0.1 1440 < th dose independent rect. 9 1
588 145.88 temperature 25.0 30 > th dose independent rect. 21 23
589 145.88 precipitation 0.1 1440 < th dose dependent rect. 9 1
603 145.92 humidity 80.0 43200 < th dose independent rect. 18 3
615 145.93 temperature 30.0 90 < th dose dependent rect. 9 9
617 145.93 temperature 20.0 10 > th dose dependent rect. 3 17
639 145.96 wind 3.0 270 < th dose independent rect. 8 15
650 145.96 temperature 15.0 10 > th dose dependent rect. 12 23
651 145.97 atmosphere 1005.0 90 > th dose dependent rect. 16 1
653 145.97 atmosphere 1000.0 30 > th dose dependent rect. 11 16
666 146.00 humidity 70.0 90 > th dose dependent rect. 10 1
669 146.00 temperature 20.0 10 > th dose dependent rect. 6 14
674 146.01 temperature 30.0 10 < th dose independent rect. 11 7
710 146.04 humidity 80.0 43200 > th dose independent rect. 18 3
714 146.05 atmosphere 1000.0 43200 > th dose dependent rect. 19 1
732 146.06 temperature 30.0 10 < th dose independent rect. 9 9
734 146.06 wind 9.0 43200 < th dose dependent rect. 23 1
742 146.07 wind 5.0 10 < th dose independent rect. 12 8
798 146.11 humidity 80.0 43200 < th dose independent rect. 16 6
806 146.12 humidity 80.0 43200 > th dose independent rect. 17 5
815 146.13 wind 7.0 10 < th dose independent rect. 12 23
822 146.13 temperature 30.0 90 < th dose dependent rect. 10 14
824 146.14 atmosphere 1015.0 10 < th dose independent rect. 17 23
825 146.14 wind 1.0 14400 < th dose dependent rect. 21 3
830 146.14 radiation 40.0 43200 < th dose dependent rect. 16 11
834 146.14 atmosphere 1015.0 30 < th dose dependent rect. 3 23
836 146.15 atmosphere 1005.0 43200 > th dose independent rect. 6 12
839 146.15 wind 3.0 90 < th dose dependent sin 20 NA
840 146.15 radiation 40.0 43200 < th dose dependent rect. 16 1
841 146.15 radiation 30.0 43200 < th dose dependent rect. 16 3
886 146.17 radiation 30.0 43200 < th dose independent rect. 15 1
888 146.17 wind 7.0 10 > th dose independent rect. 16 11
890 146.17 wind 5.0 10 < th dose independent rect. 6 20
891 146.17 temperature 25.0 10 < th dose independent rect. 21 22
892 146.17 wind 1.0 10 > th dose independent rect. 12 23
914 146.18 atmosphere 1010.0 43200 < th dose independent rect. 19 1
915 146.18 atmosphere 1005.0 43200 > th dose independent rect. 14 11
938 146.19 radiation 30.0 43200 < th dose independent rect. 15 12
945 146.19 humidity 50.0 14400 > th dose dependent rect. 2 6
995 146.21 temperature 10.0 270 > th dose dependent rect. 3 10
999 146.22 atmosphere 1005.0 43200 > th dose independent rect. 12 4