BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0526600 Os04g0526600|AY166458
(200 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73260.1 | chr1:27547410-27548057 REVERSE LENGTH=216 97 4e-21
AT1G17860.1 | chr1:6149343-6149933 FORWARD LENGTH=197 86 1e-17
AT1G73325.1 | chr1:27567518-27568186 REVERSE LENGTH=223 60 1e-09
AT1G72290.1 | chr1:27215852-27216499 FORWARD LENGTH=216 48 3e-06
>AT1G73260.1 | chr1:27547410-27548057 REVERSE LENGTH=216
Length = 215
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 95/187 (50%), Gaps = 28/187 (14%)
Query: 27 VYDTEGHELSADGSYYVLPASPGHGGGLTMAPR-VLPCPLLVAQETDERRKGFPVRFTPW 85
V D +G+ + + SYYVLP G GGGLT+A R PCP + QE+ E +G PV+F+ W
Sbjct: 30 VVDIDGNAMFHE-SYYVLPVIRGRGGGLTLAGRGGQPCPYDIVQESSEVDEGIPVKFSNW 88
Query: 86 --GGAAAPEDRTIRVSTDVRIRFNAATICVQSTEWHVGDEPLTGARRVVTGPLIGPSPSG 143
A PE + + + TDV ATIC+QST W VG+ + V GP P G
Sbjct: 89 RLKVAFVPESQNLNIETDV-----GATICIQSTYWRVGEFDHERKQYFVVA---GPKPEG 140
Query: 144 -----RENAFRVEKYG-GGYKLVSC-------RDSCQDLGVSRD--GARAWLGASQPPHV 188
++ F++EK G YK V C C D+G+ D G R L S P +
Sbjct: 141 FGQDSLKSFFKIEKSGEDAYKFVFCPRTCDSGNPKCSDVGIFIDELGVRR-LALSDKPFL 199
Query: 189 VVFKKAR 195
V+FKKA
Sbjct: 200 VMFKKAN 206
>AT1G17860.1 | chr1:6149343-6149933 FORWARD LENGTH=197
Length = 196
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 21/179 (11%)
Query: 26 PVYDTEGHELSADGSYYVLPASPGHGGGLTMAP-RVLPCPLLVAQETDERRKGFPVRFTP 84
PV D G L +YY+LP G GGGLTM+ + CP V Q+ E +G PV+F+P
Sbjct: 28 PVKDINGKSLLTGVNYYILPVIRGRGGGLTMSNLKTETCPTSVIQDQFEVSQGLPVKFSP 87
Query: 85 WGGAAAPEDRTIRVSTDVRIRFNAATICVQSTEWHVGDEPLTGARRVVTGPLIGPSPSGR 144
+ + RTI VSTDV I+F+ +I W + + T + ++ + +P +
Sbjct: 88 YD-----KSRTIPVSTDVNIKFSPTSI------WELANFDETTKQWFISTCGVEGNPGQK 136
Query: 145 --ENAFRVEKYGGGYKL-------VSCRDSCQDLGVSRDGARAWLGASQPPHVVVFKKA 194
+N F+++K+ YK+ C+ C+D+GV + L S P V+FK+A
Sbjct: 137 TVDNWFKIDKFEKDYKIRFCPTVCNFCKVICRDVGVFVQDGKRRLALSDVPLKVMFKRA 195
>AT1G73325.1 | chr1:27567518-27568186 REVERSE LENGTH=223
Length = 222
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 27 VYDTEGHELSADGSYYVLPASPGHGGGL-----TMAPRVLPCPLLVAQETDERRKGFPVR 81
V D GH + ++ YY++PA G GGGL ++ + L L + Q + G PV
Sbjct: 32 VLDIAGHPVQSNVQYYIIPAKIGTGGGLIPSNRNLSTQDLCLNLDIVQSSSPFVSGLPVT 91
Query: 82 FTPWGGAAAPEDRTIRVSTDVRIRFNAAT-ICVQSTEWHVGDEPLTGARRVVTGPLIGPS 140
F+P + +++S + + F++ +C S W + D + + V+ IG
Sbjct: 92 FSPLNTKV----KHVQLSASLNLEFDSTVWLCPDSKVWRI-DHSVQLRKSFVS---IGGQ 143
Query: 141 PSGRENAFRVEKYGGGYKLVSCRDS----CQDLGVSRD--GARAWLGASQPPHVVVFKKA 194
+ F++++ G YKL+ C S C ++ + D G R + ++ VV F+KA
Sbjct: 144 KGKGNSWFQIQEDGDAYKLMYCPISSIVACINVSLEIDDHGVRRLVLSTDQSFVVKFQKA 203
Query: 195 RPS 197
S
Sbjct: 204 YDS 206
>AT1G72290.1 | chr1:27215852-27216499 FORWARD LENGTH=216
Length = 215
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 74/177 (41%), Gaps = 29/177 (16%)
Query: 26 PVYDTEGHELSADGSYYVLPAS--PGHGGGLT-MAPRVLP-CPLLVAQETDERRKGFPVR 81
PV DT G+ L+ Y++ P +GGGL A VLP CPL + Q + G PV
Sbjct: 26 PVKDTAGNPLNTREQYFIQPVKTESKNGGGLVPAAITVLPFCPLGITQTLLPYQPGLPVS 85
Query: 82 FTPWGGAAAPEDRTIRVSTDVRIRF--NAATICVQ-STEWHVGDEPLTGARRVVTGPLIG 138
F G + T+ S+ V I F N C + S W V D + LIG
Sbjct: 86 FVLALGVGS----TVMTSSAVNIEFKSNIWPFCKEFSKFWEVDDSSSAPKEPSI---LIG 138
Query: 139 PSPSGRENAFRVEKYGGG-----YKLVSCRD----------SCQDLGVSRDGARAWL 180
R ++F++EK G G YKL + S L +++D A+ L
Sbjct: 139 GKMGDRNSSFKIEKAGEGARANVYKLTTFYGTVGAIPGVWLSAPQLIITKDTAKTLL 195
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,484,445
Number of extensions: 192917
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 4
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)