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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0525200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.77 (0.0507) R2 : 0.328
β1 : 1.47 (0.186) R2dD : 0.0967 R2D : 0.0253
β2 : 0.241 (0.121) R2dC : 0.00561 R2C : -0.0304
β3 : 1.66 (0.16) R2dE : 0.165 R2E : 0.0722
β4 : -2.24 (0.465) R2dD*C : 0.0344 R2D*C : 0.00925
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.937 (0.109) R2dN8 : 0.149 R2N8 : 0.0355
σ : 0.946
deviance : 412.38
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_____
C
peak time of C : 0.982
E
wheather : radiation
threshold : 36.98
memory length : 877
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
412.34 0.954 3.77 1.48 0.235 1.68 -2.24 -0.215 0.942 0.814 36.84 876 -- --
412.38 0.946 3.77 1.47 0.241 1.66 -2.24 -- 0.937 0.982 36.98 877 -- --
432.39 0.968 3.76 1.55 0.325 1.68 -- 0.392 0.951 1.09 35 921 -- --
432.73 0.969 3.76 1.57 0.332 1.69 -- -- 0.959 1.11 35 921 -- --
436.18 0.973 3.76 1.54 -- 1.61 -- 0.359 0.934 -- 36.4 863 -- --
471.77 1.02 3.78 1.39 1.06 -- 0.243 -- 0.749 6.5 -- -- -- --
471.84 1.02 3.78 1.39 1.06 -- -- -- 0.748 6.37 -- -- -- --
436.34 0.973 3.76 1.55 -- 1.62 -- -- 0.944 -- 36.72 863 -- --
495.23 1.04 3.81 -- 0.404 1.28 -- -- 0.743 3.85 69.61 908 -- --
530.33 1.08 3.8 1.42 -- -- -- -- 0.77 -- -- -- -- --
522.89 1.07 3.81 -- 1.08 -- -- -- 0.593 6.3 -- -- -- --
499.2 1.04 3.8 -- -- 1.53 -- -- 0.77 -- 40 838 -- --
583.48 1.13 3.84 -- -- -- -- -- 0.613 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 408.99 radiation 10 720 < th dose independent rect. 14 10
3 411.15 radiation 20 720 < th dose dependent rect. 14 10
4 411.15 radiation 10 720 < th dose dependent rect. 10 14
38 414.33 radiation 1 720 > th dose dependent rect. 15 14
41 414.41 radiation 1 720 > th dose dependent rect. 15 4
79 415.92 radiation 10 720 < th dose dependent sin 19 NA
98 416.78 radiation 10 720 < th dose dependent rect. 3 21
113 417.62 radiation 10 720 < th dose independent sin 17 NA
114 417.64 radiation 10 720 > th dose independent rect. 15 2
117 418.02 radiation 1 720 < th dose independent rect. 3 21
144 418.46 radiation 30 720 < th dose dependent rect. 11 19
176 418.97 radiation 20 720 < th dose independent rect. 11 19
212 419.94 radiation 10 720 > th dose independent sin 15 NA
283 421.38 radiation 1 720 < th dose independent rect. 3 15
291 421.49 radiation 1 720 > th dose dependent sin 14 NA
311 421.87 humidity 80 720 < th dose independent rect. 15 2
377 422.83 radiation 1 720 > th dose independent rect. 15 22
384 422.93 radiation 10 720 > th dose independent rect. 9 9
449 423.60 radiation 1 720 < th dose dependent rect. 3 15
478 424.00 radiation 10 720 > th dose independent rect. 11 7
547 424.34 radiation 30 720 < th dose dependent rect. 18 23
619 425.09 radiation 10 720 < th dose independent rect. 14 3
675 425.57 radiation 20 720 < th dose independent rect. 18 22
681 425.63 radiation 30 720 < th dose dependent no NA NA
748 426.15 radiation 20 720 < th dose dependent rect. 23 23
753 426.18 radiation 20 720 < th dose dependent rect. 21 23
776 426.22 radiation 40 720 < th dose dependent rect. 3 12
835 426.58 radiation 1 720 > th dose dependent rect. 11 18
837 426.60 temperature 30 90 < th dose independent rect. 3 14
840 426.61 radiation 1 720 > th dose dependent rect. 11 8
868 426.65 radiation 30 90 < th dose independent rect. 3 13
878 426.74 wind 5 30 < th dose independent rect. 17 11
906 426.84 radiation 1 720 > th dose dependent rect. 9 20
911 426.85 radiation 1 720 > th dose dependent rect. 9 10
934 426.92 humidity 90 720 < th dose dependent rect. 15 2
957 427.07 atmosphere 1005 720 < th dose independent rect. 16 9
974 427.12 humidity 80 720 < th dose independent rect. 9 10