Os04g0519900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0519900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.17 | 0.262 | 10.3 | 0.3 | 0.156 | -0.404 | 0.403 | 1.06 | 0.112 | 8.11 | 25.3 | 2030 | -- | -- |
| 33.3 | 0.271 | 10.3 | -0.107 | 0.249 | -0.182 | 0.245 | -- | -0.0106 | 10.3 | 25.3 | 2030 | -- | -- |
| 31.65 | 0.262 | 10.3 | 0.298 | 0.153 | -0.405 | -- | 1.01 | 0.112 | 7.97 | 25.3 | 2030 | -- | -- |
| 32.23 | 0.264 | 10.3 | -0.0219 | 0.244 | -0.286 | -- | -- | 0.0209 | 8.05 | 23.18 | 1584 | -- | -- |
| 32.9 | 0.267 | 10.3 | 0.326 | -- | -0.45 | -- | 1.03 | 0.127 | -- | 25.2 | 2030 | -- | -- |
| 35.59 | 0.28 | 10.3 | -0.146 | 0.235 | -- | 0.296 | -- | -0.0973 | 8.31 | -- | -- | -- | -- |
| 35.87 | 0.28 | 10.3 | -0.137 | 0.234 | -- | -- | -- | -0.0974 | 8.3 | -- | -- | -- | -- |
| 34.18 | 0.272 | 10.3 | 0.0714 | -- | -0.404 | -- | -- | 0.00647 | -- | 25.3 | 2030 | -- | -- |
| 32.23 | 0.264 | 10.3 | -- | 0.236 | -0.297 | -- | -- | 0.0247 | 8.2 | 23 | 1609 | -- | -- |
| 38.91 | 0.291 | 10.3 | -0.136 | -- | -- | -- | -- | -0.0949 | -- | -- | -- | -- | -- |
| 36.36 | 0.282 | 10.3 | -- | 0.234 | -- | -- | -- | -0.0822 | 8.34 | -- | -- | -- | -- |
| 32.7 | 0.266 | 10.3 | -- | -- | -0.372 | -- | -- | 0.0419 | -- | 25.2 | 739 | -- | -- |
| 39.4 | 0.293 | 10.3 | -- | -- | -- | -- | -- | -0.0798 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.80 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 19 |
| 2 | 28.91 | temperature | 20 | 30 | > th | dose dependent | rect. | 18 | 18 |
| 6 | 29.37 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 21 |
| 14 | 29.55 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 15 | 29.55 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 21 | 29.63 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 22 | 29.64 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 27 | 29.68 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 33 | 29.73 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 40 | 29.86 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 41 | 29.87 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 42 | 29.88 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 43 | 29.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 11 |
| 47 | 29.92 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 50 | 29.93 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 61 | 29.94 | humidity | 70 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 68 | 29.95 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 20 |
| 73 | 29.97 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 75 | 29.97 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 76 | 29.97 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 77 | 29.97 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 78 | 29.97 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 86 | 29.98 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 88 | 29.98 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 103 | 29.98 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 106 | 29.99 | radiation | 30 | 43200 | < th | dose independent | sin | 16 | NA |
| 109 | 29.99 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 132 | 30.00 | radiation | 40 | 43200 | < th | dose independent | sin | 14 | NA |
| 137 | 30.00 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 138 | 30.00 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 142 | 30.01 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 183 | 30.02 | radiation | 1 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 201 | 30.03 | radiation | 1 | 43200 | > th | dose dependent | rect. | 15 | 18 |
| 231 | 30.05 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 252 | 30.05 | radiation | 10 | 43200 | < th | dose dependent | sin | 11 | NA |
| 284 | 30.06 | radiation | 1 | 43200 | > th | dose dependent | sin | 12 | NA |
| 305 | 30.07 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 357 | 30.08 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 502 | 30.10 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 520 | 30.11 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 525 | 30.11 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 10 |
| 532 | 30.11 | humidity | 60 | 43200 | < th | dose dependent | sin | 9 | NA |
| 533 | 30.11 | radiation | 20 | 43200 | > th | dose dependent | sin | 13 | NA |
| 586 | 30.13 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |
| 729 | 30.13 | radiation | 20 | 43200 | > th | dose dependent | sin | 15 | NA |
| 789 | 30.15 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 810 | 30.15 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 811 | 30.15 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 837 | 30.15 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 22 |
| 852 | 30.16 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 880 | 30.16 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 882 | 30.16 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 896 | 30.17 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 1 |