BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0519900 Os04g0519900|AK071665
         (217 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20660.1  | chr5:6986402-6990947 FORWARD LENGTH=911            185   2e-47

>AT5G20660.1 | chr5:6986402-6990947 FORWARD LENGTH=911
          Length = 910

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/211 (46%), Positives = 131/211 (62%), Gaps = 12/211 (5%)

Query: 9   SYVTLFSNTPGKLTKELVDLRDEEFSCGRNRAIDFVTFTMKYGCLSYEGTNTGWSKSEVP 68
           ++++LFSNTPG L  E   ++ E F CGR   IDFV+F  KY C++ +    GW K ++P
Sbjct: 704 AFISLFSNTPGNLNMEAEQIK-EGFRCGRENKIDFVSFEAKYNCVTKKDAEVGWDKHDIP 762

Query: 69  VLSLKSDSVTNDARQTIISVDTKSSTRWSLAINKQEIDDFTVHVDSEN----LVPLGNKS 124
           VL + +D      R   +S+DT  S+RW+L I+  EI+DFT+ V  E     ++  G KS
Sbjct: 763 VLRVINDKEREGGRVIAVSMDTGGSSRWTLRIDMDEIEDFTMQVGEEEEEELMIERGEKS 822

Query: 125 E-IDGWHTIQFAGGKDSPTKFQLTLFWASNSKDAFPKQVESEDHSFLLKLRTDVNRVTPK 183
              +GWH IQFAGGK +PT F L L+      D   KQ        LLKLRTD+NR TP+
Sbjct: 823 SNEEGWHQIQFAGGKKAPTSFVLKLYKEEEVSDDKKKQRP------LLKLRTDLNRRTPQ 876

Query: 184 VGRVLEKLPGWCAPFGKSTSPYTLAFLTALP 214
           V RVLE+LP +C  FGKSTSP+TLAFL +LP
Sbjct: 877 VQRVLERLPPFCTMFGKSTSPFTLAFLASLP 907



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,957,946
Number of extensions: 205910
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 123
Effective length of database: 8,529,465
Effective search space: 1049124195
Effective search space used: 1049124195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)