Os04g0516600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aromatic amino acid beta-eliminating lyase/threonine aldolase domain containing protein.
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Os04g0516600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aromatic amino acid beta-eliminating lyase/threonine aldolase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.93 | 0.603 | 12.8 | 0.954 | 2.49 | -1.48 | 2.46 | 0.439 | -0.151 | 6.26 | 52.56 | 1007 | -- | -- |
| 165.18 | 0.599 | 12.8 | 0.996 | 2.49 | -1.46 | 2.55 | -- | -0.148 | 6.27 | 53.61 | 1004 | -- | -- |
| 178.18 | 0.622 | 12.8 | 0.939 | 2.45 | -1.34 | -- | 0.879 | -0.162 | 5.99 | 50 | 1038 | -- | -- |
| 178.18 | 0.622 | 12.8 | 1.02 | 2.32 | -1.13 | -- | -- | -0.159 | 5.75 | 51.04 | 1200 | -- | -- |
| 439.64 | 0.982 | 12.8 | 1.15 | -- | 1.35 | -- | -0.927 | -0.038 | -- | 50 | 1038 | -- | -- |
| 197.63 | 0.659 | 12.8 | 1.08 | 2.39 | -- | 1.74 | -- | -0.101 | 5.52 | -- | -- | -- | -- |
| 204.55 | 0.67 | 12.8 | 1.08 | 2.4 | -- | -- | -- | -0.11 | 5.36 | -- | -- | -- | -- |
| 441.08 | 0.982 | 12.8 | 1.13 | -- | 1.26 | -- | -- | -0.0355 | -- | 53.07 | 1285 | -- | -- |
| 205.32 | 0.667 | 12.8 | -- | 2.35 | -1.25 | -- | -- | -0.272 | 5.79 | 48.64 | 1176 | -- | -- |
| 505.4 | 1.05 | 12.8 | 1.16 | -- | -- | -- | -- | -0.0506 | -- | -- | -- | -- | -- |
| 235.45 | 0.718 | 12.8 | -- | 2.42 | -- | -- | -- | -0.231 | 5.35 | -- | -- | -- | -- |
| 474.79 | 1.02 | 12.9 | -- | -- | 1.28 | -- | -- | -0.161 | -- | 53.07 | 1285 | -- | -- |
| 541.16 | 1.09 | 12.9 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.96 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 5 |
| 2 | 154.35 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 19 | 156.90 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 38 | 157.98 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 67 | 158.76 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 117 | 160.08 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 131 | 160.45 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 144 | 160.72 | humidity | 90 | 720 | > th | dose independent | rect. | 19 | 5 |
| 169 | 161.13 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 184 | 161.34 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 198 | 161.54 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 201 | 161.55 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 255 | 162.21 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 316 | 162.80 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 8 |
| 359 | 163.15 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 12 |
| 446 | 163.92 | humidity | 80 | 720 | > th | dose independent | sin | 18 | NA |
| 471 | 164.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 502 | 164.32 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 617 | 164.99 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 620 | 165.00 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 621 | 165.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 728 | 165.65 | radiation | 20 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 800 | 166.14 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 834 | 166.35 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 21 |
| 835 | 166.38 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 913 | 166.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 930 | 166.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |