BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0516600 Os04g0516600|AK059652
         (372 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08630.1  | chr1:2743948-2745685 REVERSE LENGTH=359            468   e-132
AT3G04520.1  | chr3:1217397-1219571 REVERSE LENGTH=356            450   e-127

>AT1G08630.1 | chr1:2743948-2745685 REVERSE LENGTH=359
          Length = 358

 Score =  468 bits (1205), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/348 (64%), Positives = 276/348 (79%), Gaps = 1/348 (0%)

Query: 1   MVTNVVDLRSDTVTKPSXXXXXXXXXXXXXXXXXXXXPTAHRFEMEMARITGKEAALFVP 60
           MV   VDLRSDTVT+P+                    PTA R E EMA++ GKEAALFVP
Sbjct: 1   MVMRSVDLRSDTVTRPTDAMREAMCNAEVDDDVLGYDPTARRLEEEMAKMMGKEAALFVP 60

Query: 61  SGTMANLISVLVHCDTRGSEVILGDNSHIHIYENGGISTIGGVHPKTVRNNPDGTMDIDK 120
           SGTM NLISV+VHCD RGSEVILGDN HIH+YENGGISTIGGVHPKTV+N  DGTMD++ 
Sbjct: 61  SGTMGNLISVMVHCDVRGSEVILGDNCHIHVYENGGISTIGGVHPKTVKNEEDGTMDLEA 120

Query: 121 IVVAIRHPDGALYYPTTRLICLENTHANCGGKCLSAEYTDEVGEVAKSHGLKLHIDGARI 180
           I  AIR P G+ +YP+TRLICLENTHAN GG+CLS EYT++VGE+AK HG+KLHIDGAR+
Sbjct: 121 IEAAIRDPKGSTFYPSTRLICLENTHANSGGRCLSVEYTEKVGEIAKRHGVKLHIDGARL 180

Query: 181 FNASVALGVPVHRLVKAADSVSVCISKGLGAPVGSVIVGSTAFIEKAKILRKTLGGGMRQ 240
           FNAS+ALGVPVH+LVKAADSV VC+SKGLGAPVGSVIVGS +FIEKAK +RKTLGGGMRQ
Sbjct: 181 FNASIALGVPVHKLVKAADSVQVCLSKGLGAPVGSVIVGSQSFIEKAKTVRKTLGGGMRQ 240

Query: 241 VGILCAAAYVAVRDTVGKLADDHRRAKVLADGLKKIKHFRVDTTSVETNMVFFDIVD-SR 299
           +G+LCAAA VA+++ + KL  DH++AK+LA+GL ++K  RV+  +VETNM+F D+ D SR
Sbjct: 241 IGVLCAAALVALQENLPKLQHDHKKAKLLAEGLNQMKGIRVNVAAVETNMIFMDMEDGSR 300

Query: 300 ISPDKLCQVLEQRNVLAMPAGSKSMRLVIHYQISDSDVQYALTCVEKA 347
           ++ +KL + LE+  +L +   S  +R+VIH+QI+ SDV Y L+C ++A
Sbjct: 301 LTAEKLRKNLEENGILLIRGNSSRIRIVIHHQITTSDVHYTLSCFQQA 348



>AT3G04520.1 | chr3:1217397-1219571 REVERSE LENGTH=356
          Length = 355

 Score =  450 bits (1157), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/342 (62%), Positives = 265/342 (77%), Gaps = 1/342 (0%)

Query: 6   VDLRSDTVTKPSXXXXXXXXXXXXXXXXXXXXPTAHRFEMEMARITGKEAALFVPSGTMA 65
           VDLRSDTVTKP+                    PTA R E E+A I GKEAA+FVPSGTM 
Sbjct: 10  VDLRSDTVTKPTESMRSAMANAEVDDDVLGNDPTALRLEKEVAEIAGKEAAMFVPSGTMG 69

Query: 66  NLISVLVHCDTRGSEVILGDNSHIHIYENGGISTIGGVHPKTVRNNPDGTMDIDKIVVAI 125
           NLISVLVHCD RGSEVILGD+SHIHIYENGG+S++GGVHP+TV+N  DGTM+I  I  A+
Sbjct: 70  NLISVLVHCDERGSEVILGDDSHIHIYENGGVSSLGGVHPRTVKNEEDGTMEIGAIEAAV 129

Query: 126 RHPDGALYYPTTRLICLENTHANCGGKCLSAEYTDEVGEVAKSHGLKLHIDGARIFNASV 185
           R P G L++P T+LICLENT ANCGG+CL  EY D+VGE+AK HGLKLHIDGARIFNASV
Sbjct: 130 RSPKGDLHHPVTKLICLENTQANCGGRCLPIEYIDKVGELAKKHGLKLHIDGARIFNASV 189

Query: 186 ALGVPVHRLVKAADSVSVCISKGLGAPVGSVIVGSTAFIEKAKILRKTLGGGMRQVGILC 245
           ALGVPV R+V+AADSVS+C+SKG+GAPVGSVIVGS  FI KA+ LRKTLGGGMRQ+G+LC
Sbjct: 190 ALGVPVKRIVQAADSVSICLSKGIGAPVGSVIVGSKKFITKARWLRKTLGGGMRQIGVLC 249

Query: 246 AAAYVAVRDTVGKLADDHRRAKVLADGLKKIKHFRVDTTSVETNMVFFDIV-DSRISPDK 304
           AAA VA+ + V KL DDH++A+VLA+GL +I+  RV+  +VETN+++ DI  D +   ++
Sbjct: 250 AAALVALHENVAKLEDDHKKARVLAEGLNRIERLRVNVAAVETNIIYVDIPEDPKFGAEE 309

Query: 305 LCQVLEQRNVLAMPAGSKSMRLVIHYQISDSDVQYALTCVEK 346
            C+ LE   VL +P  +  +R+V+H+QISD DV+Y L+C EK
Sbjct: 310 ACKSLEDVGVLVIPQATFRIRIVLHHQISDVDVEYVLSCFEK 351



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,418,219
Number of extensions: 302634
Number of successful extensions: 695
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 691
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,364,969
Effective search space: 2275271568
Effective search space used: 2275271568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)