FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0511200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EFA27 for EF hand, abscisic acid, 27kD.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.91 (0.0561) R2 : 0.423
β1 : -2.94 (0.202) R2dD : 0.32 R2D : 0.209
β2 : 0.745 (0.123) R2dC : 0.0473 R2C : 0.00627
β3 : 0.597 (0.177) R2dE : 0.0183 R2E : -0.0102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.14 (0.782) R2dD*E : 0.188 R2D*E : -0.0372
γ1 : 0.352 (0.117) R2dN8 : 0.0174 R2N8 : 0.000182
σ : 0.963
deviance : 427.09
__
_____
C
peak time of C : 23.2
E
wheather : radiation
threshold : 30.24
memory length : 5772
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 17.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
425.57 0.969 3.91 -2.97 0.739 0.585 -0.689 -8.23 0.338 23.5 30.24 5777 15.1 17.1
517.12 1.06 4.1 -2.69 0.849 -0.422 -0.496 -- 0.183 23 20.33 13667 15.4 17.7
427.09 0.963 3.91 -2.94 0.745 0.597 -- -8.14 0.352 23.2 30.24 5772 15.1 17.1
515.75 1.06 4.1 -2.67 0.841 -0.432 -- -- 0.177 23 20.37 13962 15.8 19.2
456.92 0.996 3.89 -2.89 -- 0.659 -- -7.79 0.37 -- 30.23 5469 15.1 17.2
525.8 1.07 4.14 -2.6 0.703 -- -0.781 -- 0.0338 23.5 -- -- -- --
528.2 1.08 4.13 -2.56 0.712 -- -- -- 0.0385 23.1 -- -- -- --
541.7 1.08 4.08 -2.75 -- -0.699 -- -- 0.23 -- 21.95 13184 16.5 21
679.26 1.21 4.1 -- 0.849 -0.445 -- -- 0.19 22.8 20.01 13952 17.5 19.1
559.81 1.11 4.12 -2.55 -- -- -- -- 0.0444 -- -- -- -- --
701.6 1.24 4.07 -- 0.69 -- -- -- 0.324 22.9 -- -- -- --
679.86 1.21 4.19 -- -- -0.949 -- -- 0.543 -- 10.01 21880 16.3 22.6
731.11 1.26 4.05 -- -- -- -- -- 0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 441.77 temperature 20 14400 < th dose dependent rect. 4 15
12 442.58 temperature 20 14400 < th dose dependent sin 1 NA
33 443.41 temperature 20 14400 < th dose dependent rect. 23 21
51 443.78 temperature 20 14400 < th dose dependent rect. 2 22
76 444.14 temperature 20 14400 < th dose dependent rect. 8 23
82 444.19 temperature 15 14400 > th dose independent rect. 1 2
86 444.21 temperature 20 14400 < th dose dependent no NA NA
87 444.21 temperature 20 14400 < th dose dependent rect. 5 5
90 444.26 temperature 20 14400 < th dose dependent rect. 11 23
173 445.01 temperature 15 14400 < th dose independent rect. 24 4
181 445.05 temperature 15 14400 > th dose independent rect. 21 8
219 445.41 temperature 15 14400 < th dose independent rect. 22 7
228 445.47 temperature 15 14400 < th dose independent rect. 22 9
245 445.67 temperature 15 14400 < th dose independent rect. 24 7
315 446.23 temperature 20 14400 < th dose dependent sin 15 NA
320 446.29 temperature 15 14400 > th dose independent sin 12 NA
324 446.31 temperature 15 14400 < th dose independent sin 9 NA
327 446.31 temperature 15 14400 > th dose independent rect. 22 17
425 446.84 temperature 20 14400 < th dose dependent rect. 6 1
469 447.12 temperature 15 14400 > th dose independent rect. 10 21
495 447.26 temperature 15 14400 < th dose independent rect. 23 15
541 447.48 temperature 20 14400 < th dose dependent rect. 23 1
554 447.55 wind 1 14400 < th dose dependent rect. 1 5
581 447.72 temperature 15 14400 < th dose independent rect. 5 2
598 447.82 temperature 15 14400 > th dose independent no NA NA
611 447.88 temperature 15 14400 < th dose independent rect. 23 1
658 448.20 temperature 15 14400 > th dose independent rect. 4 23
686 448.44 temperature 15 14400 > th dose independent rect. 2 23
810 449.42 wind 1 14400 < th dose dependent rect. 22 8
820 449.50 temperature 15 14400 < th dose independent rect. 9 21
838 449.67 radiation 30 4320 > th dose independent rect. 15 17
866 449.90 temperature 20 14400 > th dose independent rect. 6 1
957 451.06 radiation 30 4320 > th dose independent rect. 15 2
973 451.07 temperature 15 14400 < th dose independent no NA NA
984 451.27 wind 1 14400 < th dose dependent rect. 3 3