Os04g0508900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0508900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ssl1-like domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.91	(0.0198)	R²	:	0.378
β₁	:	0.688	(0.077)	R²_dD	:	0.15	R²_D	:	-0.208
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	24.6	(1.49)	R²_dE	:	13.8	R²_E	:	-13.6
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	119	(7.14)	R²_dD*E	:	13.9	R²_D*E	:	-13.3
γ₁	:	0.0759	(0.0389)	R²_dN8	:	0.00708	R²_N8	:	-0.0878
σ	:	0.34
deviance	:	53.45
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	7
memory length	:	89
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	3
open length of G	:	5.99

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
53.2	0.34	2.91	0.689	0.0611	24.5	-0.126	118	0.0788	16	7	90	3	6
804.92	1.32	3.16	0.936	0.187	24.7	0.374	--	0.327	3.8	6.555	6	3.25	6.25
53.22	0.34	2.91	0.689	0.0656	24.6	--	118	0.078	17.3	7.001	91	3	6
84.52	0.428	2.78	0.0603	0.0703	0.366	--	--	0.0792	16.3	4.705	5	3.82	7.88
53.45	0.34	2.91	0.688	--	24.6	--	119	0.0759	--	7	89	3	5.99
85.27	0.433	2.78	0.0534	0.0649	--	-0.114	--	0.0688	15	--	--	--	--
85.31	0.433	2.78	0.0509	0.0641	--	--	--	0.0681	14.7	--	--	--	--
83.6	0.426	2.77	0.106	--	0.429	--	--	0.0954	--	4.801	24	3.79	7.85
81.04	0.419	2.81	--	0.105	0.894	--	--	0.0612	15.6	5	102	2.73	7
85.55	0.432	2.78	0.0481	--	--	--	--	0.0665	--	--	--	--	--
85.38	0.432	2.78	--	0.0632	--	--	--	0.0624	14.7	--	--	--	--
80.35	0.417	2.78	--	--	1.11	--	--	0.0822	--	5.147	102	3.33	6.45
85.62	0.432	2.78	--	--	--	--	--	0.0611	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	53.20	wind	7.0	90	> th	dose independent	rect.	3	6
2	53.20	wind	7.0	90	> th	dose independent	rect.	1	8
3	53.21	wind	7.0	90	> th	dose independent	rect.	8	1
9	53.21	wind	7.0	90	> th	dose dependent	rect.	8	1
46	68.56	radiation	20.0	270	> th	dose dependent	rect.	6	1
61	69.04	radiation	20.0	270	> th	dose independent	rect.	6	1
78	70.53	radiation	40.0	90	> th	dose dependent	rect.	8	1
95	70.63	temperature	25.0	10	< th	dose dependent	rect.	9	1
108	72.76	wind	5.0	90	> th	dose independent	rect.	23	11
110	72.92	wind	5.0	90	> th	dose dependent	rect.	23	11
111	73.01	wind	7.0	720	> th	dose independent	rect.	8	1
166	74.30	wind	5.0	720	> th	dose dependent	rect.	8	1
235	76.28	temperature	25.0	10	< th	dose dependent	rect.	9	9
243	76.46	wind	7.0	720	> th	dose dependent	rect.	1	8
281	77.52	humidity	80.0	90	< th	dose dependent	rect.	8	1
284	77.57	wind	5.0	90	> th	dose dependent	rect.	17	17
289	77.66	temperature	25.0	10	< th	dose dependent	rect.	9	7
310	78.02	humidity	70.0	90	< th	dose independent	rect.	8	2
317	78.19	temperature	25.0	10	< th	dose independent	rect.	9	1
418	78.70	wind	5.0	30	> th	dose dependent	rect.	15	19
433	78.90	wind	5.0	90	> th	dose independent	rect.	17	17
451	79.13	wind	5.0	90	> th	dose independent	rect.	15	19
457	79.16	wind	7.0	1440	< th	dose independent	rect.	1	8
492	79.25	humidity	90.0	720	< th	dose dependent	rect.	6	1
519	79.45	wind	7.0	1440	< th	dose independent	rect.	8	1
565	79.69	temperature	25.0	720	< th	dose dependent	rect.	9	1
570	79.72	precipitation	0.1	1440	> th	dose dependent	rect.	17	1
582	79.77	wind	7.0	1440	< th	dose independent	rect.	6	3
598	79.86	radiation	20.0	90	> th	dose independent	rect.	8	1
627	80.01	radiation	20.0	10	< th	dose independent	rect.	10	1
739	80.45	precipitation	0.1	1440	< th	dose independent	rect.	17	1
740	80.45	temperature	25.0	10	< th	dose dependent	sin	22	NA
741	80.45	precipitation	0.1	1440	< th	dose dependent	rect.	17	1
758	80.52	precipitation	0.1	1440	> th	dose independent	rect.	17	1
850	80.83	radiation	20.0	1440	< th	dose independent	rect.	1	6
857	80.87	humidity	90.0	720	< th	dose independent	rect.	5	1
866	80.88	wind	1.0	1440	< th	dose dependent	rect.	20	1
884	80.94	temperature	25.0	720	< th	dose dependent	rect.	7	7
890	80.96	wind	1.0	1440	< th	dose dependent	rect.	18	3
942	81.08	temperature	25.0	90	< th	dose dependent	rect.	8	15
992	81.18	radiation	20.0	90	> th	dose dependent	rect.	8	1
995	81.19	temperature	20.0	1440	> th	dose independent	rect.	21	1