BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0508900 Os04g0508900|011-093-H04
         (173 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05055.1  | chr1:1448913-1450852 REVERSE LENGTH=422            254   2e-68

>AT1G05055.1 | chr1:1448913-1450852 REVERSE LENGTH=422
          Length = 421

 Score =  254 bits (648), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 116/155 (74%), Positives = 142/155 (91%)

Query: 1   AASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTEIGGSPESQIK 60
           AA+EMD+RPSRMA++AK+ E FIREFFDQNPLS +G+V++K+G++H LT++GGSPE+ IK
Sbjct: 93  AAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIK 152

Query: 61  ALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGDIMETIAKCKK 120
           ALMGKLE  G+ SLQNALELVH +L+QVPSYGH+EVL LYSAL TCDPGDIMETI KCKK
Sbjct: 153 ALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIMETIQKCKK 212

Query: 121 SKIRCSVIGLAAEIFICKYLCEETGGSYTVALDEV 155
           SK+RCSVIGL+AE+FICK+LC+ETGG Y+VA+DEV
Sbjct: 213 SKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEV 247



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,883,174
Number of extensions: 153656
Number of successful extensions: 328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)