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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0508600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lung seven transmembrane receptor family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0147) R2 : 0.00807
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0595 (0.0309) R2dN8 : 0.0104 R2N8 : 0.00807
σ : 0.276
deviance : 35.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.29 0.275 2.85 0.0757 0.0214 0.118 -0.00892 0.99 0.0292 5.12 9.401 4937 -- --
34.87 0.275 2.84 0.0542 0.0392 0.0906 0.0341 -- 0.0243 5.42 10.19 10297 -- --
34.23 0.272 2.85 0.031 0.0167 0.0606 -- 0.705 0.037 5.86 9.997 4940 -- --
34.64 0.274 2.84 0.0282 0.0168 0.104 -- -- -0.0154 5.49 10.56 13212 -- --
34 0.272 2.85 0.15 -- 0.0733 -- 1.21 0.0476 -- 10.4 4932 -- --
35.02 0.277 2.82 -0.0141 0.0141 -- -0.0532 -- 0.0574 4.62 -- -- -- --
35.02 0.277 2.82 -0.0137 0.0148 -- -- -- 0.0577 5.84 -- -- -- --
34.66 0.274 2.84 0.0285 -- 0.103 -- -- -0.0147 -- 10.56 13221 -- --
34.66 0.274 2.84 -- 0.0175 0.0972 -- -- -0.0139 5.54 10.57 13212 -- --
35.04 0.277 2.82 -0.0133 -- -- -- -- 0.058 -- -- -- -- --
35.03 0.277 2.82 -- 0.0146 -- -- -- 0.0592 5.89 -- -- -- --
34.68 0.274 2.84 -- -- 0.0959 -- -- -0.0123 -- 10.56 13235 -- --
35.04 0.276 2.82 -- -- -- -- -- 0.0595 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.87 wind 1.0 30 > th dose independent rect. 22 1
2 32.87 humidity 90.0 30 < th dose independent rect. 22 1
3 32.87 precipitation 0.1 30 < th dose independent rect. 22 1
4 32.87 temperature 10.0 30 > th dose dependent rect. 22 1
7 32.87 precipitation 0.1 30 < th dose dependent rect. 22 1
8 32.88 temperature 20.0 30 > th dose independent rect. 22 1
9 32.89 wind 5.0 30 < th dose independent rect. 22 1
12 32.89 wind 9.0 1440 < th dose independent rect. 23 1
13 32.89 temperature 10.0 30 > th dose independent rect. 22 1
16 32.89 temperature 10.0 1440 > th dose independent rect. 23 1
19 32.89 temperature 30.0 30 < th dose independent rect. 22 1
20 32.89 temperature 30.0 1440 < th dose independent rect. 23 1
24 32.89 humidity 50.0 30 > th dose independent rect. 22 1
27 32.89 humidity 50.0 1440 > th dose independent rect. 23 1
37 32.89 atmosphere 995.0 30 > th dose independent rect. 22 1
38 32.89 atmosphere 995.0 1440 > th dose independent rect. 23 1
39 32.89 atmosphere 1010.0 30 < th dose independent rect. 22 1
41 32.89 radiation 1.0 30 < th dose independent rect. 22 1
46 32.89 radiation 1.0 1440 < th dose independent rect. 23 1
66 32.89 temperature 10.0 30 > th dose independent rect. 23 23
67 32.89 temperature 10.0 1440 > th dose independent rect. 24 23
70 32.89 radiation 1.0 30 < th dose dependent rect. 22 1
75 32.89 radiation 1.0 1440 < th dose dependent rect. 23 1
81 32.90 wind 7.0 30 < th dose dependent rect. 22 1
83 32.90 humidity 50.0 30 > th dose dependent rect. 22 1
84 32.90 atmosphere 995.0 30 > th dose dependent rect. 22 1
85 32.91 atmosphere 1005.0 30 > th dose independent rect. 22 1
89 32.91 atmosphere 1015.0 30 < th dose dependent rect. 22 1
94 32.93 wind 1.0 30 > th dose dependent rect. 22 1
97 32.94 humidity 90.0 30 < th dose dependent rect. 22 1
100 32.98 temperature 20.0 30 > th dose dependent rect. 2 1
103 33.00 temperature 20.0 30 > th dose independent rect. 2 1
105 33.02 humidity 80.0 30 > th dose independent rect. 2 1
108 33.04 temperature 30.0 30 < th dose dependent rect. 22 1
109 33.04 humidity 80.0 30 > th dose dependent rect. 2 1
110 33.05 wind 1.0 30 < th dose independent rect. 2 1
115 33.07 wind 3.0 30 < th dose dependent rect. 2 1
122 33.10 atmosphere 1005.0 30 > th dose independent rect. 2 1
126 33.12 atmosphere 995.0 30 > th dose dependent rect. 2 1
131 33.13 temperature 10.0 30 > th dose independent rect. 2 1
133 33.13 temperature 30.0 30 < th dose independent rect. 2 1
134 33.13 humidity 50.0 30 > th dose independent rect. 2 1
137 33.13 atmosphere 995.0 30 > th dose independent rect. 2 1
139 33.13 atmosphere 1010.0 30 < th dose independent rect. 2 1
141 33.13 radiation 1.0 30 < th dose independent rect. 2 1
146 33.13 precipitation 0.1 30 < th dose independent rect. 2 1
147 33.13 temperature 10.0 30 > th dose independent rect. 3 23
150 33.13 radiation 1.0 30 < th dose dependent rect. 2 1
155 33.13 precipitation 0.1 30 < th dose dependent rect. 2 1
163 33.18 atmosphere 1015.0 30 < th dose dependent rect. 2 1
200 33.34 temperature 30.0 30 < th dose dependent rect. 2 1
201 33.34 radiation 40.0 43200 < th dose dependent rect. 23 1
210 33.41 wind 9.0 30 < th dose independent rect. 23 23
213 33.43 wind 1.0 30 > th dose independent rect. 2 1
217 33.44 wind 9.0 30 < th dose independent rect. 3 23
259 33.57 radiation 1.0 14400 < th dose dependent rect. 3 1
265 33.60 wind 9.0 1440 < th dose independent rect. 3 1
266 33.60 temperature 10.0 1440 > th dose independent rect. 3 1
269 33.60 temperature 30.0 1440 < th dose independent rect. 3 1
273 33.60 humidity 50.0 1440 > th dose independent rect. 3 1
282 33.60 atmosphere 995.0 1440 > th dose independent rect. 3 1
283 33.60 radiation 1.0 1440 < th dose independent rect. 3 1
303 33.60 temperature 10.0 1440 > th dose independent rect. 4 23
306 33.60 radiation 1.0 1440 < th dose dependent rect. 3 1
322 33.63 temperature 25.0 90 > th dose independent rect. 1 3
323 33.67 temperature 25.0 270 > th dose independent rect. 1 1
324 33.71 humidity 80.0 90 < th dose independent rect. 1 2
325 33.71 humidity 80.0 30 < th dose dependent rect. 1 3
338 33.74 humidity 80.0 4320 < th dose dependent rect. 23 3
340 33.75 humidity 80.0 10 < th dose independent rect. 24 4
342 33.75 humidity 80.0 4320 < th dose dependent rect. 1 1
344 33.76 humidity 80.0 4320 < th dose independent rect. 23 2
346 33.76 atmosphere 995.0 30 > th dose independent rect. 3 23
363 33.79 humidity 80.0 4320 > th dose independent rect. 23 3
427 33.94 precipitation 0.1 30 < th dose independent rect. 3 23
433 33.94 precipitation 0.1 30 < th dose dependent rect. 3 23
434 33.95 wind 3.0 30 > th dose independent rect. 11 2
461 34.01 humidity 60.0 90 > th dose independent rect. 11 2
464 34.01 wind 9.0 4320 > th dose dependent rect. 13 1
483 34.04 temperature 20.0 30 > th dose dependent rect. 20 9
489 34.05 temperature 25.0 270 > th dose independent rect. 19 10
545 34.08 temperature 20.0 30 > th dose dependent rect. 20 7
549 34.09 temperature 20.0 270 < th dose dependent rect. 24 1
561 34.10 temperature 10.0 30 > th dose dependent rect. 20 9
589 34.14 humidity 50.0 4320 > th dose dependent rect. 24 1
615 34.16 atmosphere 1005.0 90 > th dose dependent rect. 1 3
622 34.17 humidity 60.0 270 > th dose independent rect. 9 3
623 34.17 temperature 20.0 10 > th dose independent rect. 14 6
626 34.17 wind 1.0 90 > th dose dependent rect. 11 2
627 34.17 wind 1.0 10 > th dose dependent rect. 11 3
630 34.17 humidity 50.0 270 > th dose dependent rect. 21 11
658 34.19 temperature 30.0 30 < th dose independent rect. 3 23
659 34.19 wind 5.0 10 > th dose dependent rect. 12 1
700 34.21 radiation 40.0 10 < th dose independent rect. 6 14
709 34.22 wind 9.0 4320 > th dose independent rect. 13 1
719 34.22 wind 9.0 90 < th dose independent rect. 13 22
728 34.23 wind 9.0 90 < th dose independent rect. 11 2
729 34.23 temperature 10.0 90 > th dose independent rect. 11 2
731 34.23 atmosphere 995.0 90 > th dose independent rect. 11 2
732 34.23 atmosphere 1015.0 90 < th dose independent rect. 11 2
733 34.23 radiation 1.0 90 > th dose independent rect. 11 2
734 34.23 precipitation 0.1 90 < th dose independent rect. 11 2
737 34.23 wind 7.0 10 < th dose independent rect. 14 6
743 34.23 temperature 10.0 90 > th dose independent rect. 13 22
744 34.23 temperature 10.0 90 > th dose dependent rect. 11 2
745 34.23 precipitation 0.1 90 < th dose dependent rect. 11 2
746 34.23 temperature 10.0 10 > th dose dependent rect. 11 3
750 34.23 temperature 10.0 30 > th dose dependent rect. 3 8
752 34.23 radiation 1.0 10 < th dose dependent rect. 20 22
758 34.24 radiation 1.0 10 < th dose independent rect. 20 22
776 34.25 humidity 80.0 270 > th dose independent rect. 21 11
777 34.25 temperature 25.0 270 < th dose independent rect. 18 13
778 34.25 wind 1.0 10 > th dose independent rect. 14 21
779 34.25 wind 9.0 10 < th dose independent rect. 14 21
781 34.25 radiation 40.0 10 < th dose independent rect. 14 21
783 34.25 humidity 50.0 90 > th dose dependent rect. 11 2
785 34.25 radiation 1.0 10 > th dose dependent rect. 11 3
790 34.25 temperature 10.0 30 > th dose dependent rect. 14 6
797 34.26 wind 9.0 10 < th dose independent rect. 11 3
800 34.26 temperature 10.0 1440 > th dose independent rect. 12 3
816 34.26 atmosphere 1000.0 30 > th dose independent rect. 3 8
820 34.26 temperature 10.0 1440 > th dose independent rect. 15 21
826 34.26 temperature 25.0 720 > th dose dependent rect. 6 2
853 34.27 temperature 30.0 90 < th dose independent rect. 11 2
867 34.27 temperature 10.0 720 > th dose independent rect. 3 8
869 34.27 atmosphere 995.0 720 > th dose independent rect. 3 8
871 34.27 temperature 10.0 720 > th dose independent rect. 11 16
872 34.27 atmosphere 1015.0 10 < th dose independent rect. 20 18
877 34.27 atmosphere 995.0 30 > th dose independent rect. 14 21
879 34.27 precipitation 0.1 90 < th dose independent rect. 13 22
880 34.27 radiation 40.0 10 < th dose independent rect. 3 23
899 34.27 precipitation 0.1 90 < th dose dependent rect. 13 22
912 34.28 atmosphere 1015.0 30 < th dose independent rect. 11 16
913 34.28 humidity 50.0 10 > th dose independent rect. 20 18
919 34.28 atmosphere 995.0 90 > th dose dependent rect. 11 2
936 34.29 humidity 90.0 90 < th dose independent rect. 11 2
941 34.29 wind 9.0 720 < th dose independent rect. 3 8
942 34.29 humidity 50.0 720 > th dose independent rect. 3 8
943 34.29 atmosphere 1015.0 720 < th dose independent rect. 3 8
944 34.29 wind 5.0 10 < th dose independent rect. 20 9
947 34.29 temperature 25.0 720 > th dose independent rect. 15 12
964 34.29 radiation 10.0 10 < th dose dependent rect. 20 10
976 34.30 radiation 40.0 30 < th dose independent rect. 14 6
983 34.30 radiation 40.0 10 < th dose independent rect. 3 17
987 34.30 radiation 1.0 90 > th dose independent rect. 13 22
995 34.30 temperature 20.0 30 > th dose dependent rect. 20 4
999 34.30 atmosphere 995.0 10 > th dose dependent rect. 14 6