BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0508600 Os04g0508600|AK120762
(450 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09570.1 | chr3:2940524-2941843 FORWARD LENGTH=440 400 e-112
AT5G18520.1 | chr5:6145027-6146349 FORWARD LENGTH=441 399 e-111
AT5G42090.1 | chr5:16826830-16828149 FORWARD LENGTH=440 372 e-103
AT5G02630.1 | chr5:591798-593084 FORWARD LENGTH=429 317 6e-87
>AT3G09570.1 | chr3:2940524-2941843 FORWARD LENGTH=440
Length = 439
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/406 (49%), Positives = 258/406 (63%), Gaps = 11/406 (2%)
Query: 27 EIKTTPIVADSRPVILFEEFGFKPXXXXXXXXXXXXXXXXEGSKLQAADPGLMGFILISN 86
EIK+ I DSRP+ILFE+FGF + DP +GF L+S
Sbjct: 24 EIKSLTISDDSRPMILFEKFGFTQSGHVSVSISSVAVVSSSSDPI--PDPSRLGFFLMSE 81
Query: 87 SLFFQINNESDYAEATGGAFCPLTSKYVLPLFRLKDIAPDGNGKGS--VTIDDDDQYTVL 144
Q+ E + FC L S YVL LF D++P K + ++Y++
Sbjct: 82 ESLLQVVLEIE----QNPNFCVLDSNYVLHLFTFHDLSPPPGSKYEHLYPVMSPNEYSLF 137
Query: 145 FSSCQDGVEVTMEVRTEMYNVRPGGGRGVREYLPVGLLPLPGIFAAASAVYFVFLGAWAW 204
F +C +++M+VRTEMYN+ P G + +YLP G LPG++ S Y FLG W +
Sbjct: 138 FVNCVPETKISMKVRTEMYNLDPNGSK---DYLPAGSTRLPGLYFFFSLGYLAFLGLWGY 194
Query: 205 ACARHRATAGQIHAVMGXXXXXXXXXXXXXXEDAWYVERTGTPHGWDVAFYVFGFFKGVL 264
AC ++ +IH +M ED YV+ TGTPHGWDV FY+F F + VL
Sbjct: 195 ACWVNKRVVHRIHVLMAALLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVL 254
Query: 265 LFTVIVLIGTGWSFLKPYLQEREKKVLMIVIPLQVVENIASAVIGETGPAGRDWLAWNQI 324
LFTVIVLIGTGWSFLKP+LQE+EK VLM+V+PLQV+ NIAS VIGETGP +DW+ WNQI
Sbjct: 255 LFTVIVLIGTGWSFLKPFLQEKEKNVLMVVVPLQVLANIASIVIGETGPFIKDWVTWNQI 314
Query: 325 FLLVDVICCCAVFFPIIWSIRNLREASKTDGKAARNLKKLTLFKQFYLVVVGYLYFTRIA 384
FLLVD++CCCA+ FPI+WSIR+LRE SKTDGKAARNL KLTLF+QFY+VV+GYLYFTRI
Sbjct: 315 FLLVDIVCCCAILFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIV 374
Query: 385 VSAFAAVLSYRYQWVVTVAMEAASLAFYIFVFYNFKPVENNPYLYV 430
V A + +Y+Y+WV A E ASLAFY+ +FY F+PVE N Y +
Sbjct: 375 VFALKTIAAYKYRWVSNAAEEIASLAFYMLMFYMFRPVEKNEYFVI 420
>AT5G18520.1 | chr5:6145027-6146349 FORWARD LENGTH=441
Length = 440
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/425 (48%), Positives = 265/425 (62%), Gaps = 19/425 (4%)
Query: 27 EIKTTPIVADSRPVILFEEFGFKPXXXXXXXXXXXXXXXXEGSKLQAADPG----LMGFI 82
EIK+ I D+RP+ILFE+FGF ++DP +GF
Sbjct: 25 EIKSLVISDDARPMILFEKFGFT------HTGHVTVSISSVSVVSTSSDPNPEASRLGFF 78
Query: 83 LISNSLFFQINNESDYAEATGGAFCPLTSKYVLPLFRLKDIAPDGNGK--GSVTIDDDDQ 140
L+S Q+ E FC L S YV LF +D++P N + S + ++
Sbjct: 79 LLSEESLLQVLLEIQ----QNPRFCVLDSHYVTHLFTFRDLSPPPNSRFNQSYPVTSPNE 134
Query: 141 YTVLFSSCQDGVEVTMEVRTEMYNVRPGGGRGVREYLPVGLLPLPGIFAAASAVYFVFLG 200
Y++ F++C +V+M VRTEMYN P G + +YLP G LP +++ Y FLG
Sbjct: 135 YSLFFANCVPETKVSMAVRTEMYNKDPNGSK---DYLPAGSTQLPTLYSFFFLCYVAFLG 191
Query: 201 AWAWACARHRATAGQIHAVMGXXXXXXXXXXXXXXEDAWYVERTGTPHGWDVAFYVFGFF 260
W++ C ++ T +IH +M ED YV+ TGTPHGWD+ FY+F F
Sbjct: 192 FWSYTCWTNKQTVHRIHLLMAGLLLIKSLNLICAAEDKHYVKITGTPHGWDILFYIFQFI 251
Query: 261 KGVLLFTVIVLIGTGWSFLKPYLQEREKKVLMIVIPLQVVENIASAVIGETGPAGRDWLA 320
+ VLLFTVI+LIGTGWSFLKP+LQE+EK VL+IVIPLQV+ NIAS VIGETGP +DW+
Sbjct: 252 RVVLLFTVIILIGTGWSFLKPFLQEKEKNVLIIVIPLQVLANIASIVIGETGPFIKDWVT 311
Query: 321 WNQIFLLVDVICCCAVFFPIIWSIRNLREASKTDGKAARNLKKLTLFKQFYLVVVGYLYF 380
WNQ+FLLVD+ICCCA+ FPI+WSIR+LRE SKTDGKAARNL KLTLF+QFY+VV+GYLYF
Sbjct: 312 WNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLSKLTLFRQFYIVVIGYLYF 371
Query: 381 TRIAVSAFAAVLSYRYQWVVTVAMEAASLAFYIFVFYNFKPVENNPYLYVGEDEEEEASG 440
TRI V A + +Y+YQWV A E SL FY+ +F+ F+P E N Y V +DEEE A+
Sbjct: 372 TRIVVFALKTIAAYKYQWVSFAAEEIVSLVFYVIMFHMFRPEEKNEYFAVDDDEEEAAAL 431
Query: 441 QLEME 445
L E
Sbjct: 432 ALRDE 436
>AT5G42090.1 | chr5:16826830-16828149 FORWARD LENGTH=440
Length = 439
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/432 (45%), Positives = 266/432 (61%), Gaps = 24/432 (5%)
Query: 27 EIKTTPIVADSRPVILFEEFGFKPXXXXXXXXXXXXXXXXEGSK--LQAADPGL----MG 80
EI+ + I +D RP+I +EFGF + SK L ++P L +G
Sbjct: 24 EIRKSEIRSDDRPIIPLDEFGF----------THSGRLELDASKIWLSNSNPDLDLSKVG 73
Query: 81 FILISNSLFFQINNESDYAEATGGAFCPLTSKYVLPLFRLKDIAPDGNGKGSV--TIDDD 138
F L + + + + + E T C L S V +F ++ + S T +D
Sbjct: 74 FFLCTRDAWVHVIQQLEEEEIT----CALQSDLVKHVFTFNNLKGGDKSRFSTVFTENDA 129
Query: 139 DQYTVLFSSCQDGVEVTMEVRTEMYNVRPGGGRGVREYLPVGLLPLPGIFAAASAVYFVF 198
DQY+++F++C V+++M+VR+ MYN+ G +G R+YL G LP ++ S +YF
Sbjct: 130 DQYSLVFANCLQQVKISMDVRSAMYNLE--GKKGGRDYLSAGRTVLPKVYFLFSVIYFSL 187
Query: 199 LGAWAWACARHRATAGQIHAVMGXXXXXXXXXXXXXXEDAWYVERTGTPHGWDVAFYVFG 258
W + + R T IH M ED Y+++TGT HGWDV FY+F
Sbjct: 188 AATWIYVLYKKRLTVFAIHFFMLGVVVLKALNLLCEAEDKSYIKKTGTAHGWDVLFYIFN 247
Query: 259 FFKGVLLFTVIVLIGTGWSFLKPYLQEREKKVLMIVIPLQVVENIASAVIGETGPAGRDW 318
F KG+ LFT+IVLIGTGWSFLKPYLQ++EKKVLMIVIPLQVV N A VI ETGP G+DW
Sbjct: 248 FLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANFAQVVIDETGPYGQDW 307
Query: 319 LAWNQIFLLVDVICCCAVFFPIIWSIRNLREASKTDGKAARNLKKLTLFKQFYLVVVGYL 378
+ W QIFLLVDV+CCCAV FPI+WSI+NLREA+KTDGKAA NL KLTLF+Q+Y+VV+ Y+
Sbjct: 308 VTWKQIFLLVDVVCCCAVLFPIVWSIKNLREAAKTDGKAAVNLVKLTLFRQYYIVVICYI 367
Query: 379 YFTRIAVSAFAAVLSYRYQWVVTVAMEAASLAFYIFVFYNFKPVENNPYLYVGEDEEEEA 438
YFTR+ V A + SY+Y W VA E A+LAFY+F Y F+P +NPY V ++EEE A
Sbjct: 368 YFTRVVVYALETITSYKYMWTSVVASELATLAFYLFTGYKFRPEVHNPYFVVDDEEEEAA 427
Query: 439 SGQLEMEGTFEI 450
+ L++E FE+
Sbjct: 428 AEALKLEDEFEL 439
>AT5G02630.1 | chr5:591798-593084 FORWARD LENGTH=429
Length = 428
Score = 317 bits (813), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 230/412 (55%), Gaps = 16/412 (3%)
Query: 27 EIKTTPIVADSRPVILFEEFGFKPXXXXXXXXXXXXXXXXEGSKLQAADPGLMGFILISN 86
EIK+ I DSRPVIL E+FG D +GF ++S
Sbjct: 23 EIKSFTISNDSRPVILLEKFGI------IEIGHVTVSVSSVSVLSPILDSSKLGFFVLSE 76
Query: 87 SLFFQINNESDYAEATGGAFCPLTSKYVLPLFRLKDIAPDGNGKGSVT--IDDDDQYTVL 144
+ E +FC L S Y+L F D++P + S + I + Y++
Sbjct: 77 ESLPHVLLELQ----QNFSFCVLDSHYILHFFTFVDLSPPPRSQFSKSYPITSPNDYSLF 132
Query: 145 FSSCQDGVEVTMEVRTEMYN-VRPGGGRGVREYLPVGLLPLPGIFAAASAVYFVFLGAWA 203
F++C V+M+V TE+Y+ + P G R +YL G LPG++ Y FL W
Sbjct: 133 FANCVPETRVSMKVHTEIYHDLYPNGSR---DYLLAGSAQLPGLYLVFFLCYLSFLCFWL 189
Query: 204 WACARHRATAGQIHAVMGXXXXXXXXXXXXXXEDAWYVERTGTPHGWDVAFYVFGFFKGV 263
C H+ +IH +M YV+ TGT HGW++ FY+F F V
Sbjct: 190 CFCWNHKQIVKRIHLLMTALLLVKSLTLICAAVYKHYVKVTGTAHGWNIVFYIFQFISVV 249
Query: 264 LLFTVIVLIGTGWSFLKPYLQEREKKVLMIVIPLQVVENIASAVIGETGPAGRDWLAWNQ 323
LLF VIVLIG GWSFLKP L +EKK+L+IV+PLQV+ NIAS VIGETGP +DW++WNQ
Sbjct: 250 LLFMVIVLIGNGWSFLKPKLHVKEKKLLVIVVPLQVLANIASIVIGETGPYTQDWVSWNQ 309
Query: 324 IFLLVDVICCCAVFFPIIWSIRNLREASKTDGKAARNLKKLTLFKQFYLVVVGYLYFTRI 383
IF L D+ CCCA+ F ++WS+ LRE SKTDGKA +NL KL + ++FY++V+GYL+FTRI
Sbjct: 310 IFFLADITCCCAIVFAMVWSMCCLRETSKTDGKAVKNLAKLPVLRKFYVLVIGYLFFTRI 369
Query: 384 AVSAFAAVLSYRYQWVVTVAMEAASLAFYIFVFYNFKPVENNPYLYVGEDEE 435
V + YQWV A E A+L+FY +FY F+P+E N Y V ++EE
Sbjct: 370 VVVVMKMKADFTYQWVSNAAEEIATLSFYCLMFYMFRPIEKNEYCDVDDEEE 421
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,730,796
Number of extensions: 353596
Number of successful extensions: 994
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 982
Number of HSP's successfully gapped: 5
Length of query: 450
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 348
Effective length of database: 8,310,137
Effective search space: 2891927676
Effective search space used: 2891927676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)