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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0504200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0252) R2 : 0.0596
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.286 (0.0531) R2dN8 : 0.0769 R2N8 : 0.0596
σ : 0.475
deviance : 103.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.75 0.465 3.01 -0.116 0.224 -0.263 0.133 0.521 0.272 7.33 1.1 16 -- --
98.02 0.461 3 -0.0911 0.229 -0.225 0.111 -- 0.278 7.3 1.181 16 -- --
97.8 0.461 3.01 -0.113 0.225 -0.261 -- 0.505 0.272 7.27 1.112 16 -- --
98.05 0.461 3 -0.0888 0.23 -0.223 -- -- 0.278 7.22 1.18 16 -- --
99.39 0.467 3.01 -0.143 -- -0.213 -- 0.303 0.28 -- 2.283 15 -- --
99.28 0.467 3 -0.0603 0.285 -- 0.0997 -- 0.274 6.62 -- -- -- --
99.3 0.467 3 -0.0589 0.286 -- -- -- 0.274 6.58 -- -- -- --
99.56 0.467 3 -0.142 -- -0.213 -- -- 0.292 -- 2.4 15 -- --
98.25 0.462 3 -- 0.232 -0.211 -- -- 0.287 7.2 1.186 16 -- --
103.56 0.476 3.01 -0.052 -- -- -- -- 0.28 -- -- -- -- --
99.39 0.466 3 -- 0.285 -- -- -- 0.28 6.59 -- -- -- --
100.07 0.467 3 -- -- -0.195 -- -- 0.306 -- 2.331 15 -- --
103.63 0.475 3 -- -- -- -- -- 0.286 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.69 wind 9.0 30 < th dose independent rect. 3 23
2 94.73 humidity 90.0 30 > th dose independent rect. 2 1
3 94.73 humidity 80.0 30 > th dose dependent rect. 2 1
4 94.74 wind 3.0 30 < th dose independent rect. 2 1
5 94.74 temperature 25.0 270 > th dose independent rect. 1 1
6 94.74 temperature 15.0 30 > th dose dependent rect. 2 1
9 94.74 atmosphere 1005.0 10 > th dose dependent rect. 2 1
11 94.75 wind 3.0 30 < th dose dependent rect. 2 1
16 94.75 humidity 50.0 30 > th dose dependent rect. 2 1
21 94.76 temperature 10.0 30 > th dose independent rect. 2 1
24 94.76 temperature 25.0 30 < th dose independent rect. 2 1
26 94.76 humidity 50.0 30 > th dose independent rect. 2 1
30 94.76 atmosphere 995.0 30 > th dose independent rect. 2 1
31 94.76 atmosphere 1010.0 30 < th dose independent rect. 2 1
33 94.76 radiation 1.0 30 < th dose independent rect. 2 1
38 94.76 precipitation 0.1 30 < th dose independent rect. 2 1
39 94.76 temperature 10.0 30 > th dose independent rect. 3 23
40 94.76 atmosphere 995.0 30 > th dose dependent rect. 2 1
42 94.76 radiation 1.0 30 < th dose dependent rect. 2 1
47 94.76 precipitation 0.1 30 < th dose dependent rect. 2 1
48 94.77 atmosphere 1005.0 30 > th dose independent rect. 2 1
53 94.80 atmosphere 1015.0 30 < th dose dependent rect. 2 1
59 94.83 temperature 25.0 90 > th dose independent rect. 1 3
61 94.83 temperature 30.0 30 < th dose dependent rect. 2 1
63 94.85 wind 1.0 30 > th dose independent rect. 2 1
76 94.89 atmosphere 1005.0 30 > th dose dependent rect. 2 3
107 94.98 temperature 25.0 90 > th dose dependent rect. 1 4
116 95.15 temperature 30.0 90 > th dose dependent rect. 18 16
117 95.16 temperature 30.0 90 > th dose dependent rect. 9 1
147 95.19 temperature 30.0 10 > th dose dependent rect. 9 1
216 95.28 temperature 30.0 90 > th dose independent rect. 8 1
233 95.34 temperature 30.0 90 > th dose independent rect. 18 16
254 95.45 atmosphere 1005.0 270 > th dose dependent rect. 1 2
260 95.66 atmosphere 995.0 30 > th dose independent rect. 3 23
299 95.83 precipitation 0.1 30 < th dose independent rect. 3 23
300 95.83 precipitation 0.1 30 < th dose dependent rect. 3 23
347 96.14 temperature 20.0 10 < th dose independent rect. 18 2
349 96.14 temperature 20.0 10 < th dose dependent rect. 18 2
351 96.15 temperature 20.0 90 < th dose independent rect. 18 1
352 96.15 atmosphere 1000.0 90 < th dose independent rect. 8 1
353 96.15 atmosphere 1000.0 10 < th dose independent rect. 9 1
366 96.15 temperature 20.0 90 < th dose dependent rect. 18 1
401 96.27 humidity 90.0 90 > th dose independent rect. 18 1
407 96.30 humidity 90.0 90 > th dose dependent rect. 18 2
415 96.39 humidity 50.0 30 > th dose independent rect. 3 23
450 96.61 temperature 10.0 720 > th dose dependent rect. 1 2
452 96.63 wind 9.0 1440 < th dose independent rect. 3 1
453 96.63 temperature 10.0 1440 > th dose independent rect. 3 1
456 96.63 temperature 30.0 1440 < th dose independent rect. 3 1
460 96.63 humidity 50.0 1440 > th dose independent rect. 3 1
469 96.63 atmosphere 995.0 1440 > th dose independent rect. 3 1
470 96.63 radiation 1.0 1440 < th dose independent rect. 3 1
490 96.63 temperature 10.0 1440 > th dose independent rect. 4 23
493 96.63 radiation 1.0 1440 < th dose dependent rect. 3 1
513 96.66 atmosphere 1005.0 30 > th dose independent rect. 2 3
514 96.66 atmosphere 1005.0 90 < th dose dependent rect. 8 1
522 96.70 temperature 30.0 30 > th dose independent rect. 16 19
523 96.70 atmosphere 1005.0 10 < th dose dependent rect. 9 1
557 96.82 temperature 10.0 270 > th dose dependent rect. 23 11
558 96.83 humidity 90.0 270 < th dose independent rect. 1 1
577 96.88 wind 3.0 10 < th dose dependent rect. 20 1
624 97.00 wind 1.0 10 > th dose independent rect. 5 23
646 97.06 temperature 30.0 30 < th dose independent rect. 3 23
649 97.06 humidity 90.0 270 > th dose dependent rect. 16 4
656 97.09 wind 3.0 10 < th dose independent rect. 18 2
677 97.12 wind 1.0 10 > th dose independent rect. 20 23
698 97.15 humidity 90.0 270 > th dose dependent rect. 12 8
699 97.15 temperature 10.0 90 > th dose dependent rect. 1 12
707 97.17 temperature 25.0 4320 < th dose independent rect. 23 4
723 97.20 temperature 20.0 90 > th dose dependent rect. 1 9
733 97.22 temperature 25.0 4320 > th dose independent rect. 23 3
747 97.24 temperature 30.0 90 > th dose independent sin 10 NA
758 97.24 wind 9.0 10 < th dose dependent rect. 2 11
760 97.24 wind 9.0 90 < th dose dependent rect. 1 12
761 97.25 atmosphere 1015.0 30 < th dose independent rect. 3 23
765 97.25 wind 5.0 10 < th dose dependent rect. 2 18
767 97.26 atmosphere 995.0 720 > th dose independent rect. 3 12
776 97.27 atmosphere 1000.0 30 > th dose independent rect. 5 21
783 97.28 wind 9.0 720 < th dose independent rect. 15 12
789 97.29 humidity 90.0 270 > th dose independent rect. 12 8
839 97.33 temperature 10.0 720 > th dose independent rect. 3 12
840 97.33 temperature 10.0 720 > th dose independent rect. 15 12
846 97.33 atmosphere 1005.0 10 > th dose dependent rect. 2 7
848 97.34 temperature 15.0 720 > th dose independent rect. 1 2
850 97.34 temperature 15.0 720 > th dose independent rect. 23 4
862 97.35 humidity 90.0 90 < th dose independent rect. 1 4
873 97.35 radiation 40.0 720 < th dose independent rect. 15 12
885 97.36 wind 3.0 10 < th dose independent rect. 16 5
890 97.36 wind 1.0 10 > th dose independent rect. 20 12
891 97.36 atmosphere 1010.0 10 < th dose dependent rect. 6 1
898 97.36 atmosphere 995.0 30 > th dose dependent rect. 5 21
905 97.38 atmosphere 1000.0 720 > th dose independent rect. 5 1
917 97.39 wind 5.0 90 < th dose independent rect. 1 12
920 97.39 humidity 80.0 4320 < th dose dependent rect. 1 2
927 97.40 wind 9.0 4320 < th dose independent rect. 3 3