BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0504200 Os04g0504200|AK110863
         (186 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15140.1  | chr4:8639683-8640261 REVERSE LENGTH=166             52   2e-07

>AT4G15140.1 | chr4:8639683-8640261 REVERSE LENGTH=166
          Length = 165

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 26/33 (78%)

Query: 33 YLEPSMSRGLLGMFPDSSAFDFDYSQSGIWSPL 65
          YL+P M R LL  FPD+SAF FDYSQS +WSPL
Sbjct: 27 YLQPVMCRELLCKFPDNSAFGFDYSQSSLWSPL 59



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,078,439
Number of extensions: 45015
Number of successful extensions: 89
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)