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Os04g0502900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EF-Hand type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0243) R2 : 0.662
β1 : -1.37 (0.0891) R2dD : 0.183 R2D : 0.123
β2 : 1.61 (0.0632) R2dC : 0.482 R2C : 0.443
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.452 (0.052) R2dN8 : 0.0751 R2N8 : 0.00879
σ : 0.458
deviance : 95.5
__
_____
C
peak time of C : 5.14
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.39 0.405 11.6 -1.3 1.46 -1.64 0.761 0.547 -0.391 10.3 1.679 258 -- --
74.93 0.403 11.6 -1.32 1.52 -1.76 1.27 -- -0.385 10.7 1.68 261 -- --
75.37 0.404 11.6 -1.28 1.42 -1.58 -- 1.04 -0.387 10.1 1.77 258 -- --
81.11 0.419 11.6 -1.28 1.38 -1.54 -- -- -0.386 10 1.78 258 -- --
84.6 0.428 11.7 -1.27 -- -1.73 -- 1.1 -0.366 -- 1.464 646 -- --
95.12 0.457 11.7 -1.38 1.61 -- -0.401 -- -0.454 5.09 -- -- -- --
95.5 0.458 11.7 -1.37 1.61 -- -- -- -0.452 5.14 -- -- -- --
83.24 0.425 11.7 -1.27 -- -1.92 -- -- -0.367 -- 1.521 662 -- --
123.88 0.518 11.6 -- 1.44 -1.66 -- -- -0.241 10.4 1.52 263 -- --
231.26 0.711 11.7 -1.32 -- -- -- -- -0.411 -- -- -- -- --
145.3 0.564 11.6 -- 1.59 -- -- -- -0.299 5.17 -- -- -- --
124.48 0.52 11.7 -- -- -2.05 -- -- -0.224 -- 0.8103 684 -- --
277.05 0.777 11.6 -- -- -- -- -- -0.265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.57 radiation 1 270 > th dose independent rect. 7 23
2 71.88 radiation 1 270 > th dose independent sin 22 NA
3 72.09 humidity 80 720 < th dose independent rect. 7 12
12 72.80 radiation 1 720 < th dose independent sin 16 NA
14 73.01 radiation 10 720 > th dose independent sin 14 NA
18 73.16 radiation 1 720 > th dose dependent sin 14 NA
20 73.28 radiation 1 720 > th dose dependent rect. 13 19
31 73.44 humidity 80 720 < th dose independent sin 0 NA
37 73.67 radiation 1 720 < th dose dependent sin 16 NA
44 73.96 radiation 20 720 < th dose dependent sin 15 NA
45 73.96 radiation 1 720 > th dose dependent rect. 13 6
55 73.97 radiation 40 720 < th dose dependent sin 15 NA
61 74.05 radiation 40 720 < th dose dependent rect. 13 16
62 74.07 temperature 30 720 < th dose independent rect. 8 23
64 74.11 humidity 80 720 > th dose independent rect. 1 19
66 74.14 humidity 80 720 > th dose independent rect. 2 17
67 74.16 radiation 1 720 < th dose dependent rect. 7 20
70 74.19 radiation 1 720 < th dose independent rect. 7 20
77 74.27 radiation 1 720 < th dose independent rect. 11 16
85 74.35 radiation 1 270 < th dose independent rect. 4 23
88 74.37 radiation 20 720 < th dose dependent rect. 15 8
92 74.39 temperature 30 720 < th dose independent rect. 8 21
98 74.46 radiation 20 720 > th dose independent rect. 13 19
105 74.52 radiation 1 270 < th dose independent rect. 11 21
113 74.59 temperature 30 720 < th dose independent rect. 8 7
123 74.67 radiation 10 720 > th dose independent rect. 15 16
125 74.68 temperature 30 720 < th dose independent rect. 4 16
131 74.71 humidity 70 720 > th dose independent rect. 14 22
142 74.77 radiation 30 720 < th dose dependent rect. 13 20
144 74.79 radiation 40 720 < th dose independent rect. 13 16
147 74.82 radiation 10 720 > th dose independent rect. 15 3
202 74.96 humidity 60 720 > th dose dependent rect. 1 19
212 75.02 radiation 1 720 > th dose independent rect. 13 6
227 75.03 humidity 90 720 < th dose dependent rect. 7 12
233 75.08 radiation 40 720 > th dose independent rect. 13 20
241 75.11 temperature 30 720 < th dose independent rect. 8 14
243 75.11 radiation 30 720 > th dose dependent rect. 13 3
276 75.22 radiation 1 720 > th dose dependent rect. 15 15
277 75.23 temperature 30 720 < th dose independent rect. 10 10
280 75.23 radiation 10 720 < th dose dependent rect. 15 10
320 75.31 radiation 1 720 > th dose dependent rect. 15 4
338 75.34 temperature 30 720 < th dose independent sin 0 NA
344 75.37 temperature 30 720 < th dose independent rect. 8 12
348 75.38 temperature 30 720 < th dose independent rect. 6 23
349 75.39 radiation 40 720 > th dose independent rect. 13 2
372 75.43 humidity 80 720 > th dose independent sin 2 NA
373 75.43 humidity 70 720 > th dose independent rect. 17 22
405 75.50 humidity 70 720 > th dose independent rect. 8 23
430 75.61 radiation 1 720 < th dose dependent rect. 4 14
481 75.74 temperature 25 90 > th dose dependent sin 14 NA
505 75.84 radiation 1 720 > th dose independent rect. 11 8
519 75.85 radiation 20 270 < th dose independent sin 13 NA
528 75.87 radiation 1 270 > th dose independent no NA NA
529 75.87 radiation 1 270 > th dose independent rect. 4 15
558 75.87 humidity 70 720 < th dose independent rect. 13 22
593 75.89 humidity 70 720 > th dose independent rect. 21 23
599 75.91 radiation 1 270 < th dose independent no NA NA
605 75.92 temperature 25 90 < th dose independent rect. 15 8
656 76.06 temperature 25 270 > th dose dependent rect. 13 11
666 76.09 radiation 1 720 < th dose independent rect. 1 23
667 76.10 temperature 25 90 < th dose independent rect. 13 10
668 76.10 temperature 30 720 < th dose independent rect. 6 16
677 76.13 radiation 40 720 > th dose independent sin 13 NA
688 76.13 temperature 30 720 < th dose independent rect. 6 14
691 76.13 temperature 25 720 > th dose dependent rect. 7 11
694 76.14 temperature 30 720 < th dose independent rect. 1 23
709 76.17 radiation 1 720 < th dose independent rect. 21 23
712 76.18 humidity 80 720 < th dose independent rect. 11 8
718 76.19 radiation 1 720 > th dose independent rect. 16 23
741 76.22 humidity 90 720 < th dose dependent sin 23 NA
743 76.22 humidity 50 270 > th dose dependent rect. 6 14
769 76.30 humidity 70 720 > th dose independent no NA NA
775 76.30 temperature 25 270 > th dose dependent sin 16 NA
785 76.34 radiation 1 720 < th dose independent rect. 3 15
803 76.35 radiation 1 720 < th dose independent rect. 23 23
839 76.41 radiation 1 720 < th dose dependent sin 1 NA
880 76.48 temperature 25 270 > th dose dependent rect. 13 19
885 76.50 radiation 1 720 > th dose independent rect. 11 21
954 76.60 humidity 70 720 > th dose independent rect. 15 14
980 76.64 temperature 25 720 > th dose dependent rect. 11 7