Os04g0502200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0502200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.45 | 0.212 | 11.3 | 1.21 | 0.224 | -0.74 | 0.0113 | -0.148 | 0.372 | 22.4 | 21 | 10 | -- | -- |
| 20.4 | 0.212 | 11.3 | 1.2 | 0.224 | -0.711 | -0.0102 | -- | 0.371 | 22.4 | 21 | 10 | -- | -- |
| 20.39 | 0.212 | 11.3 | 1.2 | 0.225 | -0.74 | -- | -0.118 | 0.372 | 22.4 | 21 | 10 | -- | -- |
| 20.4 | 0.212 | 11.3 | 1.2 | 0.224 | -0.711 | -- | -- | 0.371 | 22.4 | 21 | 2 | -- | -- |
| 23.3 | 0.225 | 11.3 | 1.21 | -- | -0.648 | -- | -0.0621 | 0.383 | -- | 20.8 | 79 | -- | -- |
| 24.46 | 0.232 | 11.3 | 1.32 | 0.179 | -- | 0.12 | -- | 0.429 | 21.3 | -- | -- | -- | -- |
| 24.5 | 0.232 | 11.3 | 1.32 | 0.178 | -- | -- | -- | 0.429 | 21.5 | -- | -- | -- | -- |
| 23.3 | 0.225 | 11.3 | 1.21 | -- | -0.63 | -- | -- | 0.382 | -- | 20.8 | 79 | -- | -- |
| 55.03 | 0.347 | 11.3 | -- | 0.271 | -1.35 | -- | -- | 0.204 | 23.1 | 20.72 | 26 | -- | -- |
| 26.38 | 0.24 | 11.3 | 1.32 | -- | -- | -- | -- | 0.429 | -- | -- | -- | -- | -- |
| 70.18 | 0.392 | 11.3 | -- | 0.182 | -- | -- | -- | 0.282 | 22 | -- | -- | -- | -- |
| 31.89 | 0.263 | 11.4 | -- | -- | -1.06 | -- | -- | 0.0478 | -- | 20.94 | 47520 | -- | -- |
| 72.17 | 0.397 | 11.3 | -- | -- | -- | -- | -- | 0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.53 | temperature | 25 | 90 | < th | dose dependent | sin | 16 | NA |
| 2 | 19.58 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 8 | 19.68 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 10 |
| 16 | 19.75 | temperature | 20 | 10 | > th | dose independent | sin | 15 | NA |
| 26 | 19.80 | temperature | 10 | 90 | > th | dose dependent | sin | 15 | NA |
| 29 | 19.81 | temperature | 10 | 10 | > th | dose dependent | sin | 14 | NA |
| 40 | 19.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 69 | 19.88 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 17 |
| 70 | 19.89 | temperature | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 77 | 19.89 | temperature | 20 | 90 | < th | dose dependent | rect. | 14 | 15 |
| 93 | 19.92 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 99 | 19.93 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 105 | 19.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 13 |
| 116 | 19.97 | temperature | 20 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 234 | 20.09 | temperature | 20 | 10 | < th | dose independent | sin | 14 | NA |
| 456 | 20.30 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 12 |
| 472 | 20.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 2 |
| 655 | 20.43 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 16 |
| 678 | 20.44 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 16 |
| 721 | 20.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 762 | 20.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 11 |
| 772 | 20.53 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 13 |
| 810 | 20.57 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 17 |
| 871 | 20.62 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 10 |
| 874 | 20.62 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 18 |
| 886 | 20.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 894 | 20.64 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 14 |
| 920 | 20.66 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 10 |
| 944 | 20.67 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 16 |
| 974 | 20.69 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 14 |