BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0502200 Os04g0502200|AK066572
         (1187 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11040.1  | chr5:3495332-3500610 FORWARD LENGTH=1187          1497   0.0  

>AT5G11040.1 | chr5:3495332-3500610 FORWARD LENGTH=1187
          Length = 1186

 Score = 1497 bits (3875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1211 (61%), Positives = 918/1211 (75%), Gaps = 50/1211 (4%)

Query: 1    MEPGVSIESGSAIRVAVLPVGGPISPARLRDYAALVARHARVDLASLRPYYSEHQKSPFA 60
            MEP VSIE+ S IR+AVLP+G  I P  LRDY +++ RH  + L+++  +Y+EHQKSPF 
Sbjct: 1    MEPDVSIETLSIIRIAVLPIGT-IPPTLLRDYHSMLLRHHTIALSAISSFYTEHQKSPFT 59

Query: 61   HQPWGGGCLRLKFVLGGCVPSPWEDFQSSRKVLAVVGICHLPSSPDLGRVAADFVDAARS 120
            +QPW  G LR KFVLGG  PSPWEDFQS+RK+LAV+G+CH PSSPDL  V   F  A +S
Sbjct: 60   NQPWDSGSLRFKFVLGGSPPSPWEDFQSNRKMLAVIGLCHCPSSPDLDSVTEKFNVACKS 119

Query: 121  YPSALASRCFAFCPTDAQLVQ--KKRDNIIMFPPSDQQSLELHMLTMIQDLSASLLMEFE 178
            Y SAL  RCFAF P D+QL    KK +N+I+FPPSD+Q+ E H+ TM+QD++ASLLMEFE
Sbjct: 120  YSSALVRRCFAFSPGDSQLEDGDKKGENLILFPPSDKQTQEFHLQTMMQDIAASLLMEFE 179

Query: 179  KWVLRAESTGTILKTPLDSQSSLGSEEVIKAKKRRLGRAQKIIGDYCLLAGSPADANAHY 238
            KWVL+AES GTILKTPLDSQ+SL SEEVIKAKKRRLGRAQK IGDY LLAGSP DANAHY
Sbjct: 180  KWVLQAESAGTILKTPLDSQASLNSEEVIKAKKRRLGRAQKTIGDYSLLAGSPVDANAHY 239

Query: 239  ATAIELARLTGDVFWHAGALEGSVCALVVDRMAESDPVLEDEVKFRYYTIIQLYRRATLQ 298
            +TA+ELARLTGD FW+AGALEGSVCAL+VDRM + D  LEDEV++RY  +I  YR++ +Q
Sbjct: 240  STALELARLTGDYFWYAGALEGSVCALLVDRMGQRDVALEDEVRYRYTNVILHYRKSFIQ 299

Query: 299  DNAQRVSPVSFELEAALKLARYLCRRQCAKEVSDLLMGAADGAKALIDASDRLILYIEIA 358
            + AQRVSP+SFELEA LKLAR+LCRR+ AKEV +LL  AADGAK+LIDASDRLILY+E+A
Sbjct: 300  EIAQRVSPLSFELEATLKLARFLCRRELAKEVVELLTNAADGAKSLIDASDRLILYVEVA 359

Query: 359  RLFGTLGYKRKAAFFSRQVAQLYLQQDNAYAAMSAMQVLTTTTTAYHVQSRKT------- 411
            RLFG LGY+RKAAFF RQVAQLYLQQDN  AA+SAMQVL+ TT AY +QSR +       
Sbjct: 360  RLFGALGYQRKAAFFCRQVAQLYLQQDNRLAAISAMQVLSMTTDAYRIQSRASMSKVSVN 419

Query: 412  ---------SKMDHGLLKSVVSLFESQWSTLQMVVLREILMSSIRAADPXXXXXXXXXXX 462
                      KM H    S+VSLFES WSTLQMVVLREIL+S++RA DP           
Sbjct: 420  NETGRLPDAGKMHH---HSIVSLFESHWSTLQMVVLREILLSAVRAGDPLAAWSAAARLL 476

Query: 463  XXFYPLITPAGQSGLASSLSNSADKLPSGTRCADPCLPFIRLHSFPLHPSQREIVKRNPN 522
               YPLITP+GQ+GLA+SL+NSAD+LPSGTRCADP LPF+RL SFPLH SQ +IVKRNP 
Sbjct: 477  RWHYPLITPSGQNGLANSLANSADRLPSGTRCADPALPFVRLFSFPLHSSQVDIVKRNPA 536

Query: 523  KKEWWTGGGPSGPFIYTPFTKGGTSGTSKQEVNWIVGEPVQVMVELANPCSFDLIVESIY 582
            +++WWTG  PSGPFIYTPF+KG  + +SKQE+ W+VGEPVQV+VELANPC FDL ++SIY
Sbjct: 537  REDWWTGSAPSGPFIYTPFSKGDANESSKQELIWVVGEPVQVLVELANPCCFDLRIDSIY 596

Query: 583  LSVHSGNFDAFPVSVNLPPNTSKLVLLSGIPTQVGQVSIPGCIVHCFGVITEHLFKEVDC 642
            LS HS NFDAFPVSV++PPN++K++ LSGIPT VG V+IPGC VHCFGVITEH+F++VD 
Sbjct: 597  LSAHSSNFDAFPVSVDIPPNSAKVITLSGIPTAVGPVTIPGCTVHCFGVITEHVFRDVDN 656

Query: 643  LLLGAAQGLVLSDPFRCCGSSKFKSVNFPSISXXXXXXXXXANVVGGDGSILLYEGEIRD 702
            LLLGAAQGLV SDPFR CGS+K + V  P+IS         ANVVGGDG+I+LYEGEIR+
Sbjct: 657  LLLGAAQGLVFSDPFRSCGSAKLRHVFVPNISVAPPLPLLVANVVGGDGAIILYEGEIRE 716

Query: 703  VLITLTNAGTVPVEEANVALSGKNQDSVISIAHSTWKSALPIKPGGEVTFAVTLRAWHLS 762
            V I   NAGTVP+ +A+V+LSGKNQD+VISIA    +SALP+KPG +VT  VTL+AWH+ 
Sbjct: 717  VCINFANAGTVPIVQAHVSLSGKNQDAVISIADEALQSALPLKPGAQVTLPVTLKAWHVG 776

Query: 763  PTDLE---ADGSRSPANSRRIAREGSNPFLDIHYAGP---SGNSESNDVSLPPGRRLVVP 816
            PTD +   + G  +  N+ R  ++G++P L IHYAGP   +G+S+  +  +PPGRRLVVP
Sbjct: 777  PTDSDNTMSSGRNAAGNTGR-PKDGTSPSLLIHYAGPLSNNGDSQEKESIVPPGRRLVVP 835

Query: 817  LNICVVQGMRLVRARLLSMELPARFTDAHLRSVSSKDNLSNGSDAIRNDISLLKIDPYKG 876
            L ICV+QG+  V+ARLLSME+PA  +D +LR     +++   S+A     SL+KI+P++G
Sbjct: 836  LQICVLQGLSFVKARLLSMEIPAHVSD-NLRD----EDIERESNA----DSLVKINPFRG 886

Query: 877  SWDLRLLELELFNPTDVVFDVDVSVHLDGTSVEQKILPEDKTASSACHKTRIDRDYSARV 936
            SW LR LELEL NPTDVVF++ V V L+ ++ E    P   +      KTRIDRDYSARV
Sbjct: 887  SWGLRFLELELSNPTDVVFEISVFVQLENSAKEDDSSPVQDSPEYEYPKTRIDRDYSARV 946

Query: 937  LIPLEHFKLPVLDTSFFVKENGSDEPLGSRAATLAEKNAKAELNASINNLISKIKVKWHS 996
            LIPLEHFKLPVLD SFF K+     P  SR  + +EKN KAE+N  I NLISKIKV+W S
Sbjct: 947  LIPLEHFKLPVLDGSFFTKDPPPGSPSSSRNPSFSEKNTKAEINTLIKNLISKIKVRWQS 1006

Query: 997  GRNSSGELNIKDAIQTALQASIMDILLPDPLTFSFRHAKDGTTAKTDSSKEPGDGSSRSA 1056
            GRNSSGEL+IKDAIQTALQ ++MD+LLPDPLTF FR  ++G     ++  E         
Sbjct: 1007 GRNSSGELDIKDAIQTALQTTVMDVLLPDPLTFGFRLVRNGLEKDPETKAESP------- 1059

Query: 1057 DESVLRCKDPIFANEMTHMEVQIRNNTKETIRMNLSISCKDVAGENCFDENSATVLWAGV 1116
                   K  + ++E+T MEV +RNNT E I++NLS++C+DVAG+NC +   ATVLWAG 
Sbjct: 1060 -----FSKGSVLSHEVTPMEVLVRNNTSEAIKLNLSVTCRDVAGQNCTEGADATVLWAGA 1114

Query: 1117 LSDIYLEVQPLQEVVHPFSIYFLVPGDYSLQAASVIIDATDVLRARAKAESPDEPILCRG 1176
            LS I +EV PLQE  H FS++FLVPG+Y++ AA+VI DA +VLRARA   SP+EPI CRG
Sbjct: 1115 LSGISMEVAPLQEARHCFSLFFLVPGEYTMVAAAVIEDANNVLRARAGTASPNEPIFCRG 1174

Query: 1177 SPFHIHVVGTA 1187
             PFH+ V G A
Sbjct: 1175 PPFHVCVAGGA 1185



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 24,755,161
Number of extensions: 1041244
Number of successful extensions: 2243
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2236
Number of HSP's successfully gapped: 1
Length of query: 1187
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1077
Effective length of database: 8,090,809
Effective search space: 8713801293
Effective search space used: 8713801293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)