Os04g0501100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MRS2-5.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0501100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to MRS2-5.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.55 | 0.452 | 6.69 | -2.62 | 1.38 | 0.836 | 0.958 | 5.08 | 0.133 | 3.92 | 1 | 4337 | -- | -- |
| 106.5 | 0.481 | 6.56 | -1.72 | 1.14 | 0.651 | 0.521 | -- | 0.396 | 3.73 | 11.13 | 6453 | -- | -- |
| 92.51 | 0.448 | 6.66 | -2.57 | 1.29 | 0.769 | -- | 5.24 | 0.146 | 4.14 | 1.83 | 4455 | -- | -- |
| 107.9 | 0.484 | 6.54 | -1.73 | 1.24 | 0.699 | -- | -- | 0.444 | 3.57 | 20 | 6565 | -- | -- |
| 131.07 | 0.533 | 6.61 | -2.41 | -- | 1.54 | -- | 6.56 | 0.226 | -- | 2.232 | 4831 | -- | -- |
| 114.46 | 0.502 | 6.57 | -1.66 | 1.35 | -- | 0.951 | -- | 0.282 | 3.89 | -- | -- | -- | -- |
| 117.08 | 0.507 | 6.58 | -1.67 | 1.36 | -- | -- | -- | 0.276 | 3.95 | -- | -- | -- | -- |
| 107.07 | 0.482 | 6.56 | -1.59 | -- | 1.47 | -- | -- | 0.405 | -- | 15.35 | 460 | -- | -- |
| 179.97 | 0.625 | 6.51 | -- | 1.24 | 0.721 | -- | -- | 0.59 | 3.27 | 25.91 | 2438 | -- | -- |
| 218.42 | 0.691 | 6.58 | -1.61 | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
| 190.57 | 0.646 | 6.53 | -- | 1.33 | -- | -- | -- | 0.462 | 3.97 | -- | -- | -- | -- |
| 173.63 | 0.614 | 6.51 | -- | -- | 1.59 | -- | -- | 0.604 | -- | 25.26 | 448 | -- | -- |
| 287.13 | 0.791 | 6.54 | -- | -- | -- | -- | -- | 0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.62 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 85.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 4 | 85.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 8 | 85.87 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 9 | 85.87 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 14 | 85.90 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 8 |
| 27 | 85.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 9 |
| 36 | 85.99 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 74 | 86.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 84 | 86.13 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 175 | 86.32 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 176 | 86.32 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 209 | 86.38 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 816 | 87.18 | temperature | 10.0 | 14400 | > th | dose dependent | no | NA | NA |
| 838 | 87.20 | temperature | 30.0 | 14400 | < th | dose dependent | no | NA | NA |
| 841 | 87.20 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 860 | 87.22 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 866 | 87.23 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 897 | 87.28 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 959 | 87.34 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |