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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0499100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Biopterin transport-related protein BT1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.4 (0.046) R2 : 0.475
β1 : -3.74 (0.221) R2dD : 0.733 R2D : 0.0843
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.56 (0.199) R2dE : 0.224 R2E : 0.0236
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.33 (0.906) R2dD*E : 0.12 R2D*E : -0.24
γ1 : -0.487 (0.102) R2dN8 : 0.0471 R2N8 : -0.099
σ : 0.772
deviance : 274.97
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 13.07
memory length : 554
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.69 0.754 4.38 -3.55 0.672 2.29 -1.75 -6.02 -0.39 22 9.919 280 -- --
279.86 0.779 4.28 -2.72 0.365 2.11 -2.25 -- -0.196 20.2 8.757 521 -- --
265.04 0.758 4.39 -3.61 0.472 2.17 -- -6.38 -0.41 20.3 11.93 524 -- --
294.23 0.799 4.27 -2.51 0.575 2.12 -- -- -0.146 22.1 11.17 335 -- --
274.97 0.772 4.4 -3.74 -- 2.56 -- -6.33 -0.487 -- 13.07 554 -- --
329.78 0.851 4.21 -2.14 0.987 -- -2.05 -- 0.174 19.6 -- -- -- --
341.62 0.866 4.21 -2.09 0.988 -- -- -- 0.172 19.6 -- -- -- --
304.35 0.813 4.26 -2.66 -- 2.41 -- -- -0.196 -- 7.135 566 -- --
448.27 0.986 4.19 -- 0.782 1.06 -- -- 0.287 20.3 8.077 368 -- --
393.99 0.927 4.19 -2.11 -- -- -- -- 0.157 -- -- -- -- --
457.06 1 4.16 -- 1.01 -- -- -- 0.405 19.4 -- -- -- --
474.95 1.02 4.17 -- -- 1.48 -- -- 0.215 -- 8.887 492 -- --
511.09 1.06 4.13 -- -- -- -- -- 0.39 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 253.09 temperature 10 270 > th dose dependent rect. 5 23
2 253.17 wind 9 43200 > th dose dependent rect. 13 20
3 253.68 atmosphere 995 43200 < th dose dependent rect. 15 1
5 254.11 wind 9 43200 > th dose dependent sin 13 NA
7 254.20 temperature 15 270 > th dose dependent rect. 12 23
8 254.26 atmosphere 995 43200 < th dose independent rect. 14 2
9 254.56 temperature 10 720 > th dose dependent rect. 7 20
10 254.66 atmosphere 995 43200 > th dose independent rect. 14 2
11 254.71 humidity 80 14400 > th dose dependent rect. 22 1
21 255.31 humidity 80 14400 > th dose dependent rect. 21 7
22 255.31 wind 9 43200 > th dose dependent rect. 17 15
27 255.48 atmosphere 995 43200 < th dose independent rect. 13 4
35 255.93 radiation 30 4320 < th dose independent rect. 16 16
41 256.14 temperature 30 270 < th dose dependent rect. 2 22
43 256.17 atmosphere 995 43200 > th dose independent rect. 12 8
52 256.33 temperature 30 270 < th dose dependent rect. 9 23
53 256.34 wind 9 43200 > th dose independent rect. 17 16
54 256.35 wind 9 43200 > th dose dependent rect. 20 4
57 256.44 wind 9 43200 > th dose dependent rect. 9 23
59 256.45 wind 9 43200 > th dose independent rect. 17 21
60 256.45 wind 9 43200 > th dose dependent sin 20 NA
66 256.47 wind 9 43200 > th dose dependent rect. 9 16
68 256.48 wind 9 43200 > th dose dependent rect. 9 18
86 256.72 wind 9 43200 > th dose dependent rect. 9 12
89 256.74 temperature 30 270 < th dose dependent rect. 11 23
125 257.19 wind 9 43200 > th dose dependent rect. 17 23
139 257.36 humidity 90 14400 < th dose independent rect. 20 7
144 257.40 wind 7 43200 > th dose dependent rect. 15 20
147 257.44 wind 9 43200 > th dose independent rect. 18 14
153 257.47 atmosphere 995 43200 < th dose dependent rect. 14 5
165 257.55 wind 9 43200 > th dose independent rect. 15 19
167 257.56 wind 9 43200 < th dose independent rect. 17 17
169 257.57 wind 9 43200 > th dose dependent rect. 18 6
176 257.60 wind 9 43200 > th dose dependent rect. 22 23
181 257.64 wind 9 43200 > th dose dependent rect. 5 18
184 257.65 wind 9 43200 > th dose dependent rect. 2 21
185 257.65 wind 9 43200 > th dose dependent rect. 24 23
194 257.71 wind 9 43200 > th dose independent sin 11 NA
196 257.71 temperature 10 270 > th dose dependent no NA NA
197 257.71 wind 9 43200 > th dose dependent rect. 15 23
215 257.76 wind 9 43200 > th dose dependent rect. 5 23
229 257.80 wind 9 43200 > th dose dependent no NA NA
242 257.85 wind 9 43200 > th dose dependent rect. 18 9
245 257.88 wind 9 43200 > th dose dependent rect. 17 21
269 258.02 wind 9 43200 > th dose dependent rect. 20 23
281 258.13 humidity 90 14400 < th dose independent rect. 18 11
282 258.13 wind 9 43200 < th dose independent rect. 18 20
294 258.24 atmosphere 995 43200 > th dose independent sin 22 NA
304 258.36 humidity 90 14400 > th dose dependent rect. 5 2
324 258.51 wind 9 43200 > th dose independent rect. 20 5
325 258.51 temperature 10 720 > th dose dependent rect. 21 22
331 258.56 wind 9 43200 > th dose dependent rect. 18 11
334 258.58 humidity 90 14400 < th dose independent rect. 20 11
336 258.59 wind 9 43200 < th dose independent rect. 18 14
339 258.59 wind 9 43200 > th dose independent rect. 13 22
349 258.63 atmosphere 995 43200 < th dose independent sin 22 NA
378 258.78 radiation 30 4320 < th dose independent rect. 7 1
380 258.79 radiation 30 4320 < th dose independent rect. 21 11
383 258.81 radiation 30 4320 < th dose independent rect. 1 7
394 258.89 wind 9 43200 < th dose independent rect. 15 20
415 259.09 temperature 10 720 > th dose dependent rect. 6 13
425 259.14 radiation 30 4320 < th dose independent rect. 4 4
431 259.21 wind 9 43200 > th dose independent rect. 18 6
439 259.30 wind 9 43200 < th dose independent rect. 18 6
452 259.41 wind 9 43200 < th dose independent sin 11 NA
466 259.53 wind 9 43200 > th dose dependent rect. 20 11
472 259.57 wind 9 43200 > th dose independent rect. 18 9
485 259.68 temperature 15 270 > th dose dependent rect. 23 23
495 259.77 wind 9 43200 < th dose independent rect. 13 22
569 260.23 humidity 90 14400 < th dose independent sin 11 NA
583 260.29 wind 9 43200 > th dose dependent rect. 9 5
585 260.32 humidity 90 14400 < th dose independent rect. 21 2
595 260.38 temperature 30 270 < th dose dependent no NA NA
600 260.43 wind 9 43200 < th dose independent rect. 18 9
618 260.58 wind 1 43200 < th dose dependent rect. 2 1
639 260.72 wind 9 43200 > th dose dependent rect. 9 7
688 261.04 humidity 90 14400 < th dose independent rect. 24 8
696 261.08 humidity 80 43200 < th dose dependent rect. 22 1
719 261.25 humidity 90 14400 > th dose independent rect. 18 13
723 261.28 humidity 90 14400 > th dose independent rect. 18 11
725 261.28 humidity 90 14400 > th dose dependent rect. 4 4
733 261.33 wind 9 43200 > th dose independent rect. 22 16
763 261.52 humidity 90 14400 > th dose independent rect. 21 6
769 261.57 radiation 1 14400 < th dose independent rect. 18 12
787 261.67 humidity 90 14400 > th dose independent rect. 21 11
798 261.76 wind 9 43200 > th dose independent rect. 5 9
828 261.89 wind 9 43200 > th dose independent rect. 2 12
830 261.90 humidity 80 14400 > th dose dependent sin 10 NA
842 261.95 temperature 30 270 < th dose dependent rect. 15 23
862 262.03 wind 7 43200 > th dose independent rect. 6 1
918 262.24 wind 9 43200 < th dose independent rect. 22 16
934 262.33 humidity 90 14400 > th dose independent rect. 24 8
949 262.37 temperature 30 270 < th dose dependent rect. 19 23
967 262.43 temperature 10 1440 > th dose dependent rect. 21 2
986 262.52 temperature 30 1440 < th dose dependent rect. 21 2
989 262.56 wind 9 43200 < th dose independent rect. 2 12