Os04g0496800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calcium-binding EF-hand domain containing protein.
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Os04g0496800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calcium-binding EF-hand domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.84 | 0.338 | 11.1 | -0.103 | 0.638 | -1.29 | -1.73 | 2.57 | 0.023 | 15.4 | 20.07 | 3249 | -- | -- |
| 58.24 | 0.355 | 11.1 | -0.441 | 0.637 | -1.35 | -1.71 | -- | 0.0192 | 15.2 | 17.01 | 10645 | -- | -- |
| 61.24 | 0.364 | 11.1 | -0.127 | 0.631 | -1.29 | -- | 2.59 | 0.0171 | 15.4 | 19.9 | 3295 | -- | -- |
| 68.04 | 0.384 | 11.1 | -0.466 | 0.621 | -1.37 | -- | -- | 0.0312 | 15.2 | 16.5 | 10591 | -- | -- |
| 77.91 | 0.411 | 11.1 | -0.0963 | -- | -1.38 | -- | 2.55 | 0.0117 | -- | 19.1 | 2605 | -- | -- |
| 94.98 | 0.457 | 11.2 | -1.34 | 0.683 | -- | -1.69 | -- | -0.442 | 15.1 | -- | -- | -- | -- |
| 104.32 | 0.478 | 11.2 | -1.37 | 0.674 | -- | -- | -- | -0.452 | 15 | -- | -- | -- | -- |
| 87.51 | 0.436 | 11.1 | 0.0701 | -- | -1.71 | -- | -- | 0.172 | -- | 12.48 | 22776 | -- | -- |
| 65.66 | 0.377 | 11.1 | -- | 0.635 | -1.57 | -- | -- | 0.139 | 15.3 | 12.26 | 23511 | -- | -- |
| 130.36 | 0.534 | 11.2 | -1.4 | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
| 154.08 | 0.581 | 11.2 | -- | 0.702 | -- | -- | -- | -0.299 | 15.1 | -- | -- | -- | -- |
| 87.42 | 0.435 | 11.1 | -- | -- | -1.68 | -- | -- | 0.149 | -- | 9.63 | 22769 | -- | -- |
| 182.27 | 0.63 | 11.2 | -- | -- | -- | -- | -- | -0.314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.05 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 2 | 47.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 3 | 47.12 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 7 | 47.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 8 | 47.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 11 | 47.28 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 13 | 47.34 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 15 | 47.39 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 18 | 47.43 | humidity | 90 | 43200 | > th | dose dependent | sin | 3 | NA |
| 49 | 47.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 60 | 47.85 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 64 | 47.87 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 69 | 47.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 93 | 48.05 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 20 |
| 95 | 48.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 110 | 48.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 144 | 48.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 145 | 48.24 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 151 | 48.26 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 166 | 48.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 180 | 48.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 184 | 48.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 17 |
| 187 | 48.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 199 | 48.37 | humidity | 90 | 43200 | > th | dose independent | sin | 4 | NA |
| 266 | 48.51 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 268 | 48.52 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 281 | 48.56 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 300 | 48.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 326 | 48.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 339 | 48.68 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 357 | 48.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 363 | 48.72 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 364 | 48.72 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 401 | 48.80 | humidity | 90 | 43200 | > th | dose independent | sin | 18 | NA |
| 439 | 48.88 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 453 | 48.90 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 495 | 49.01 | temperature | 15 | 43200 | > th | dose independent | sin | 8 | NA |
| 532 | 49.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 20 |
| 586 | 49.14 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 9 |
| 595 | 49.16 | humidity | 90 | 43200 | > th | dose dependent | sin | 18 | NA |
| 630 | 49.25 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 20 |
| 641 | 49.26 | temperature | 20 | 43200 | < th | dose dependent | rect. | 7 | 11 |
| 678 | 49.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 682 | 49.31 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 687 | 49.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 690 | 49.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 21 |
| 696 | 49.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 751 | 49.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 759 | 49.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 20 |
| 784 | 49.45 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 787 | 49.45 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 791 | 49.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 811 | 49.48 | temperature | 20 | 43200 | < th | dose dependent | sin | 21 | NA |
| 825 | 49.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 828 | 49.50 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 928 | 49.61 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 931 | 49.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 967 | 49.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 972 | 49.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 976 | 49.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 978 | 49.68 | humidity | 90 | 43200 | < th | dose independent | sin | 18 | NA |
| 979 | 49.68 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 3 |