FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0493600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lectin-C precursor (PL-C).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0211) R2 : 0.00249
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0473 (0.0443) R2dN8 : 0.00321 R2N8 : 0.00249
σ : 0.397
deviance : 72.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.32 0.394 3.06 0.144 0.268 -0.191 -0.968 1.08 0.0839 11.8 0.23 117 -- --
71.39 0.394 3.06 0.117 0.285 -0.187 0.0283 -- 0.0845 11.6 0.1395 92 -- --
71.06 0.393 3.06 0.104 0.27 -0.203 -- 0.369 0.122 11.5 0.14 120 -- --
71.05 0.395 3.08 0.0555 0.139 0.164 -- -- 0.0418 0.801 0.06669 122 -- --
71.64 0.394 3.07 0.0533 -- 0.0484 -- 0.197 0.0527 -- 4.74 116 -- --
71.62 0.397 3.07 0.0613 0.0761 -- 0.187 -- 0.0543 9.59 -- -- -- --
71.73 0.397 3.07 0.0676 0.0787 -- -- -- 0.0541 8.75 -- -- -- --
71.43 0.395 3.07 0.0643 -- 0.077 -- -- 0.0499 -- 0.06669 122 -- --
71.13 0.395 3.08 -- 0.145 0.168 -- -- 0.0353 0.772 0.06669 122 -- --
72.08 0.397 3.07 0.0677 -- -- -- -- 0.0548 -- -- -- -- --
71.85 0.397 3.07 -- 0.0789 -- -- -- 0.0466 8.68 -- -- -- --
71.54 0.395 3.08 -- -- 0.0776 -- -- 0.0427 -- 0.06669 122 -- --
72.2 0.397 3.07 -- -- -- -- -- 0.0473 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.03 humidity 90.0 10 < th dose dependent rect. 4 1
4 65.39 humidity 90.0 10 < th dose independent rect. 4 1
6 65.42 atmosphere 1005.0 10 > th dose dependent rect. 4 1
8 65.53 temperature 30.0 30 < th dose dependent rect. 4 1
10 65.56 atmosphere 1005.0 10 > th dose independent rect. 4 1
11 65.57 wind 5.0 10 < th dose independent rect. 4 1
14 65.61 wind 9.0 10 < th dose dependent rect. 4 1
17 65.63 temperature 10.0 10 > th dose independent rect. 4 1
19 65.63 temperature 30.0 10 < th dose independent rect. 4 1
20 65.63 humidity 50.0 10 > th dose independent rect. 4 1
23 65.63 atmosphere 995.0 10 > th dose independent rect. 4 1
24 65.63 atmosphere 1010.0 10 < th dose independent rect. 4 1
26 65.63 radiation 1.0 10 < th dose independent rect. 4 1
31 65.63 temperature 10.0 10 > th dose independent rect. 5 23
32 65.63 radiation 10.0 10 < th dose dependent rect. 4 1
45 65.66 precipitation 0.1 10 < th dose independent rect. 4 1
48 65.66 precipitation 0.1 10 < th dose dependent rect. 4 1
78 65.69 humidity 50.0 30 > th dose dependent rect. 4 1
80 65.70 wind 1.0 10 > th dose independent rect. 4 1
82 65.70 atmosphere 1015.0 30 < th dose dependent rect. 4 1
83 65.71 temperature 10.0 10 > th dose dependent rect. 4 1
94 65.83 wind 7.0 1440 < th dose independent rect. 5 1
97 65.83 temperature 10.0 1440 > th dose independent rect. 5 1
100 65.83 temperature 30.0 1440 < th dose independent rect. 5 1
104 65.83 humidity 50.0 1440 > th dose independent rect. 5 1
113 65.83 atmosphere 995.0 1440 > th dose independent rect. 5 1
114 65.83 atmosphere 1015.0 1440 < th dose independent rect. 5 1
115 65.83 radiation 20.0 1440 < th dose independent rect. 5 1
124 65.83 temperature 10.0 1440 > th dose independent rect. 6 23
150 65.92 wind 1.0 30 > th dose dependent rect. 4 1
163 66.15 wind 9.0 30 < th dose independent rect. 5 23
168 66.19 atmosphere 995.0 10 > th dose independent rect. 5 23
170 66.22 precipitation 0.1 30 < th dose independent rect. 5 23
171 66.22 precipitation 0.1 30 < th dose dependent rect. 5 23
223 68.39 humidity 50.0 30 > th dose independent rect. 5 23
229 68.53 radiation 1.0 10 < th dose dependent rect. 4 10
232 68.57 radiation 1.0 90 > th dose independent rect. 17 22
242 68.60 radiation 1.0 10 < th dose dependent rect. 4 4
249 68.63 radiation 1.0 10 < th dose independent rect. 4 10
256 68.68 wind 1.0 90 > th dose independent rect. 15 14
260 68.71 radiation 1.0 10 < th dose independent rect. 4 4
332 68.97 temperature 30.0 30 < th dose independent rect. 5 23
337 69.00 temperature 10.0 30 > th dose dependent rect. 5 23
347 69.03 atmosphere 1000.0 90 > th dose independent rect. 5 10
364 69.04 temperature 30.0 90 < th dose independent rect. 15 14
384 69.13 temperature 10.0 90 > th dose dependent rect. 5 10
391 69.16 wind 9.0 90 < th dose independent rect. 5 10
399 69.18 humidity 50.0 90 > th dose independent rect. 15 14
400 69.19 atmosphere 1000.0 90 > th dose independent rect. 15 14
410 69.23 precipitation 0.1 90 < th dose independent rect. 5 10
412 69.23 precipitation 0.1 90 < th dose dependent rect. 5 10
414 69.24 radiation 1.0 10 > th dose independent rect. 5 11
418 69.24 precipitation 0.1 90 < th dose independent rect. 15 14
427 69.24 precipitation 0.1 90 < th dose dependent rect. 15 14
428 69.25 temperature 10.0 90 > th dose independent rect. 5 10
429 69.25 atmosphere 1015.0 90 < th dose independent rect. 5 10
430 69.25 temperature 10.0 90 > th dose independent rect. 15 14
439 69.30 wind 1.0 90 > th dose independent rect. 3 14
456 69.32 atmosphere 1005.0 270 > th dose dependent rect. 1 1
457 69.33 radiation 40.0 90 < th dose independent rect. 15 14
463 69.37 humidity 50.0 90 > th dose independent rect. 5 10
466 69.38 atmosphere 1005.0 90 > th dose dependent rect. 16 1
469 69.39 wind 9.0 90 < th dose independent rect. 15 14
480 69.45 atmosphere 1000.0 10 > th dose independent rect. 17 23
483 69.47 temperature 30.0 90 < th dose independent rect. 3 14
505 69.53 atmosphere 1005.0 90 > th dose independent rect. 16 1
507 69.53 wind 1.0 90 > th dose independent rect. 5 10
517 69.55 atmosphere 995.0 90 > th dose dependent rect. 15 14
519 69.56 atmosphere 1005.0 10 > th dose dependent rect. 16 2
584 69.71 radiation 20.0 90 > th dose independent rect. 16 1
601 69.71 wind 9.0 10 < th dose independent rect. 17 23
610 69.72 atmosphere 1015.0 90 < th dose independent rect. 15 14
618 69.73 wind 5.0 30 > th dose dependent rect. 16 1
619 69.73 radiation 10.0 30 > th dose dependent rect. 16 1
634 69.74 wind 7.0 30 > th dose independent rect. 16 1
642 69.75 wind 3.0 30 > th dose independent rect. 16 1
644 69.75 temperature 10.0 1440 > th dose independent rect. 17 1
649 69.75 radiation 30.0 1440 < th dose independent rect. 17 1
658 69.75 temperature 10.0 1440 > th dose independent rect. 18 23
664 69.76 temperature 30.0 30 < th dose independent rect. 16 1
665 69.76 humidity 90.0 30 < th dose independent rect. 16 1
714 69.76 atmosphere 995.0 30 > th dose dependent rect. 16 1
718 69.77 wind 9.0 30 < th dose independent rect. 16 1
719 69.77 temperature 10.0 30 > th dose independent rect. 16 1
723 69.77 humidity 50.0 30 > th dose independent rect. 16 1
727 69.77 atmosphere 1010.0 30 < th dose independent rect. 16 1
730 69.77 radiation 40.0 30 < th dose independent rect. 16 1
731 69.77 precipitation 0.1 30 < th dose independent rect. 16 1
734 69.77 atmosphere 1000.0 90 > th dose independent rect. 17 10
738 69.77 temperature 10.0 30 > th dose independent rect. 17 23
740 69.77 temperature 10.0 30 > th dose dependent rect. 16 1
742 69.77 humidity 90.0 30 < th dose dependent rect. 16 1
743 69.77 precipitation 0.1 30 < th dose dependent rect. 16 1
752 69.78 wind 1.0 90 > th dose independent rect. 5 22
755 69.78 humidity 50.0 30 > th dose dependent rect. 16 1
774 69.79 radiation 20.0 30 < th dose independent rect. 16 1
795 69.79 atmosphere 1015.0 30 < th dose dependent rect. 16 1
796 69.79 radiation 40.0 30 < th dose dependent rect. 16 1
819 69.81 humidity 90.0 270 < th dose independent rect. 1 1
821 69.81 humidity 90.0 270 < th dose independent rect. 1 4
828 69.81 wind 9.0 30 < th dose dependent rect. 16 1
834 69.81 wind 9.0 30 < th dose dependent rect. 5 23
863 69.83 radiation 10.0 90 < th dose independent rect. 5 22
865 69.83 atmosphere 1015.0 30 < th dose independent rect. 5 23
866 69.83 precipitation 0.1 30 < th dose independent rect. 17 23
874 69.83 precipitation 0.1 30 < th dose dependent rect. 17 23
895 69.84 wind 9.0 90 < th dose independent rect. 17 10
924 69.86 wind 3.0 30 > th dose independent rect. 8 1
934 69.86 radiation 30.0 90 < th dose independent rect. 13 16
935 69.86 temperature 30.0 30 < th dose dependent rect. 16 1
983 69.88 radiation 10.0 90 < th dose dependent rect. 5 22
984 69.88 temperature 10.0 30 > th dose dependent rect. 17 23
994 69.89 atmosphere 1000.0 90 > th dose independent rect. 3 14
996 69.89 temperature 30.0 90 < th dose independent rect. 13 16