BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0493600 Os04g0493600|009-094-A08
(91 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G43570.1 | chr2:18076389-18077435 REVERSE LENGTH=278 57 2e-09
AT2G43610.1 | chr2:18088058-18089184 REVERSE LENGTH=282 55 5e-09
AT2G43590.1 | chr2:18081592-18082749 REVERSE LENGTH=265 54 1e-08
AT3G54420.1 | chr3:20145935-20147034 FORWARD LENGTH=274 52 4e-08
AT2G43580.1 | chr2:18078817-18080013 REVERSE LENGTH=266 51 1e-07
AT2G43620.1 | chr2:18093954-18095025 REVERSE LENGTH=284 50 2e-07
>AT2G43570.1 | chr2:18076389-18077435 REVERSE LENGTH=278
Length = 277
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 28 QNCGCQDGYCCSQWGYCGTTEAYCGQGCQSGPC 60
QNCGC +CCS++GYCGTT+ +CG+GCQ+GPC
Sbjct: 32 QNCGCASDFCCSKYGYCGTTDEFCGEGCQAGPC 64
>AT2G43610.1 | chr2:18088058-18089184 REVERSE LENGTH=282
Length = 281
Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%), Gaps = 3/36 (8%)
Query: 28 QNCG---CQDGYCCSQWGYCGTTEAYCGQGCQSGPC 60
QNCG C+ CCS+WGYCGTT+AYCG GCQSGPC
Sbjct: 29 QNCGTNGCKGNMCCSRWGYCGTTKAYCGTGCQSGPC 64
>AT2G43590.1 | chr2:18081592-18082749 REVERSE LENGTH=265
Length = 264
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 28 QNCGCQDGYCCSQWGYCGTTEAYCGQGCQSGPC 60
QNCGC CCSQ+GYCGT +AYCG GC+SGPC
Sbjct: 25 QNCGCAPNLCCSQFGYCGTDDAYCGVGCRSGPC 57
>AT3G54420.1 | chr3:20145935-20147034 FORWARD LENGTH=274
Length = 273
Score = 52.4 bits (124), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 28 QNCGCQDGYCCSQWGYCGTTEAYCGQGCQSGPCW 61
QNCGC CCSQ+G+CG T YCG GCQ GPC+
Sbjct: 29 QNCGCSSELCCSQFGFCGNTSDYCGVGCQQGPCF 62
>AT2G43580.1 | chr2:18078817-18080013 REVERSE LENGTH=266
Length = 265
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 24/33 (72%)
Query: 28 QNCGCQDGYCCSQWGYCGTTEAYCGQGCQSGPC 60
QNC C CCSQ+GYCGTT YCG CQSGPC
Sbjct: 25 QNCDCAPNLCCSQFGYCGTTADYCGSTCQSGPC 57
>AT2G43620.1 | chr2:18093954-18095025 REVERSE LENGTH=284
Length = 283
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 31 GCQDGYCCSQWGYCGTTEAYCGQGCQSGPC 60
GC CCS++GYCGTT+AYCG GC+SGPC
Sbjct: 35 GCAANLCCSRYGYCGTTDAYCGTGCRSGPC 64
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.132 0.493
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,236,721
Number of extensions: 27390
Number of successful extensions: 76
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 7
Length of query: 91
Length of database: 11,106,569
Length adjustment: 62
Effective length of query: 29
Effective length of database: 9,406,777
Effective search space: 272796533
Effective search space used: 272796533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)