Os04g0488600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF565 family protein.
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Os04g0488600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF565 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.11 | 0.319 | 11.1 | -0.783 | 0.956 | -0.935 | 0.605 | -1.96 | -0.486 | 0.74 | 24.9 | 90 | -- | -- |
| 50.98 | 0.335 | 11.1 | -1.07 | 0.942 | -0.729 | 0.0299 | -- | -0.539 | 0.55 | 24.9 | 90 | -- | -- |
| 47.32 | 0.32 | 11.1 | -0.855 | 0.947 | -0.945 | -- | -1.64 | -0.486 | 0.687 | 24.79 | 119 | -- | -- |
| 50.92 | 0.332 | 11.1 | -1.07 | 0.943 | -0.743 | -- | -- | -0.55 | 0.603 | 25.18 | 68 | -- | -- |
| 79.48 | 0.415 | 11.1 | -0.794 | -- | -0.796 | -- | -1.77 | -0.453 | -- | 32.58 | 2428 | -- | -- |
| 58.91 | 0.36 | 11.1 | -0.9 | 0.801 | -- | 0.0206 | -- | -0.398 | 0.421 | -- | -- | -- | -- |
| 58.91 | 0.359 | 11.1 | -0.901 | 0.801 | -- | -- | -- | -0.398 | 0.419 | -- | -- | -- | -- |
| 78.67 | 0.413 | 11.1 | -1.22 | -- | -1.14 | -- | -- | -0.581 | -- | 33.85 | 962 | -- | -- |
| 78.58 | 0.415 | 11.1 | -- | 0.852 | -0.325 | -- | -- | -0.355 | 0.436 | 25.18 | 68 | -- | -- |
| 99.19 | 0.465 | 11.1 | -0.874 | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
| 80.31 | 0.419 | 11.1 | -- | 0.788 | -- | -- | -- | -0.298 | 0.36 | -- | -- | -- | -- |
| 111.71 | 0.492 | 11.1 | -- | -- | -0.649 | -- | -- | -0.373 | -- | 46.85 | 927 | -- | -- |
| 119.33 | 0.51 | 11.1 | -- | -- | -- | -- | -- | -0.288 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 4 | 43.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 11 | 43.36 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 23 | 43.55 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 90 | 43.93 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 98 | 43.98 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 12 |
| 100 | 43.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 213 | 44.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 221 | 44.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 223 | 44.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 230 | 44.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 236 | 44.39 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 242 | 44.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 248 | 44.43 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 17 |
| 258 | 44.44 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 272 | 44.47 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 296 | 44.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 334 | 44.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 347 | 44.63 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 348 | 44.63 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 3 |
| 461 | 44.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 463 | 44.86 | temperature | 15 | 4320 | > th | dose dependent | sin | 12 | NA |
| 472 | 44.88 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 492 | 44.91 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 500 | 44.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 565 | 45.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 617 | 45.11 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 692 | 45.23 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 777 | 45.33 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 841 | 45.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 946 | 45.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 967 | 45.52 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 12 |