BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0488600 Os04g0488600|AK073488
         (155 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43050.1  | chr5:17268404-17268880 FORWARD LENGTH=159          192   4e-50

>AT5G43050.1 | chr5:17268404-17268880 FORWARD LENGTH=159
          Length = 158

 Score =  192 bits (489), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 105/116 (90%), Gaps = 2/116 (1%)

Query: 42  VRAVQGNDGR--RRLVDIIRTIPELSRNYFRSRSRRALFGGISLLGGFYVAQTISLSFGA 99
           +RA+Q  +G   RRL+DIIR++PE+SRNYF+  SRR LFGGISLLGGFYVAQTISLSFGA
Sbjct: 43  IRALQETEGPTPRRLIDIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGA 102

Query: 100 LGVNDVIAAVVCVLLTEYVTKFYYSRPKVTFPFALLNNFKMGFTYGLFIDAFKLAS 155
           LGVNDVIAAV+CVLLTEYVT+FYYSR  VTFP ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 103 LGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.142    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,132,412
Number of extensions: 117011
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 65
Effective length of database: 8,639,129
Effective search space: 561543385
Effective search space used: 561543385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)