Os04g0486900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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Os04g0486900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.07 | 0.463 | 10.7 | -0.973 | 1.08 | -0.904 | 1.44 | 2.24 | -0.329 | 17.6 | 9.41 | 205 | -- | -- |
| 118.75 | 0.508 | 10.7 | -1.02 | 1.06 | -0.905 | 0.549 | -- | -0.323 | 17.7 | 8.917 | 192 | -- | -- |
| 101.28 | 0.469 | 10.7 | -0.986 | 1.13 | -0.856 | -- | 1.93 | -0.32 | 17.4 | 9.414 | 192 | -- | -- |
| 119.4 | 0.509 | 10.7 | -1.04 | 1.07 | -0.902 | -- | -- | -0.336 | 17.6 | 8.91 | 192 | -- | -- |
| 127.79 | 0.526 | 10.7 | -0.815 | -- | -1.42 | -- | 1.29 | -0.353 | -- | 4.871 | 403 | -- | -- |
| 129.9 | 0.534 | 10.7 | -1.06 | 1.74 | -- | -1.13 | -- | -0.311 | 15.5 | -- | -- | -- | -- |
| 133.51 | 0.541 | 10.7 | -1.08 | 1.75 | -- | -- | -- | -0.318 | 15.7 | -- | -- | -- | -- |
| 136.74 | 0.545 | 10.7 | -0.943 | -- | -1.65 | -- | -- | -0.403 | -- | 6.3 | 409 | -- | -- |
| 148.22 | 0.567 | 10.7 | -- | 1.08 | -0.949 | -- | -- | -0.223 | 17.6 | 9.27 | 191 | -- | -- |
| 302.12 | 0.812 | 10.7 | -1.15 | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
| 164.31 | 0.6 | 10.7 | -- | 1.77 | -- | -- | -- | -0.197 | 15.7 | -- | -- | -- | -- |
| 163.84 | 0.596 | 10.7 | -- | -- | -1.72 | -- | -- | -0.357 | -- | 7.13 | 431 | -- | -- |
| 337.24 | 0.857 | 10.6 | -- | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.51 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 3 | 95.05 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 8 | 95.54 | radiation | 10.0 | 270 | < th | dose independent | rect. | 9 | 22 |
| 9 | 95.55 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 10 | 95.58 | radiation | 10.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 12 | 95.64 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 13 | 95.78 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 22 | 96.18 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 31 | 96.35 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 33 | 96.46 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 84 | 97.51 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 93 | 97.82 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 23 |
| 98 | 97.95 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 14 |
| 103 | 98.02 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 118 | 98.31 | radiation | 40.0 | 720 | < th | dose independent | rect. | 10 | 5 |
| 120 | 98.32 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 140 | 98.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 147 | 98.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 163 | 98.98 | radiation | 10.0 | 270 | < th | dose dependent | no | NA | NA |
| 186 | 99.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 10 |
| 187 | 99.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 189 | 99.38 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 192 | 99.41 | radiation | 40.0 | 720 | < th | dose independent | rect. | 3 | 19 |
| 195 | 99.42 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 202 | 99.49 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 203 | 99.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 207 | 99.54 | radiation | 20.0 | 720 | < th | dose independent | rect. | 6 | 17 |
| 208 | 99.56 | radiation | 10.0 | 270 | < th | dose independent | rect. | 14 | 23 |
| 210 | 99.57 | humidity | 90.0 | 270 | < th | dose independent | sin | 6 | NA |
| 211 | 99.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 14 |
| 213 | 99.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 218 | 99.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 225 | 99.68 | radiation | 10.0 | 270 | < th | dose independent | no | NA | NA |
| 226 | 99.69 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 243 | 99.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 256 | 99.90 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 277 | 100.14 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 280 | 100.19 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 22 |
| 283 | 100.21 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 286 | 100.24 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 14 |
| 304 | 100.30 | radiation | 40.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 309 | 100.37 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 312 | 100.39 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 323 | 100.48 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 327 | 100.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 7 |
| 329 | 100.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 337 | 100.58 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 378 | 100.77 | radiation | 40.0 | 720 | < th | dose independent | sin | 23 | NA |
| 414 | 100.94 | radiation | 10.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 417 | 100.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 423 | 100.97 | radiation | 20.0 | 720 | < th | dose independent | sin | 22 | NA |
| 431 | 101.00 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 437 | 101.03 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 12 |
| 451 | 101.05 | radiation | 10.0 | 720 | < th | dose independent | sin | 13 | NA |
| 473 | 101.14 | radiation | 10.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 486 | 101.19 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 515 | 101.33 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 14 |
| 523 | 101.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 525 | 101.35 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 526 | 101.35 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 528 | 101.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 672 | 101.73 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 683 | 101.78 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 10 | 7 |
| 712 | 101.91 | humidity | 70.0 | 720 | > th | dose independent | rect. | 10 | 14 |
| 714 | 101.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 17 |
| 717 | 101.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 758 | 102.04 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 787 | 102.14 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 810 | 102.23 | radiation | 10.0 | 270 | < th | dose independent | rect. | 19 | 23 |
| 882 | 102.42 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 895 | 102.46 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 901 | 102.47 | radiation | 40.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 945 | 102.63 | radiation | 20.0 | 270 | < th | dose independent | sin | 10 | NA |