BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0486900 Os04g0486900|AK109531
(153 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67600.1 | chr1:25336701-25337455 REVERSE LENGTH=164 193 3e-50
AT1G24350.3 | chr1:8639098-8640313 REVERSE LENGTH=187 183 3e-47
AT3G21610.1 | chr3:7609377-7610601 REVERSE LENGTH=175 180 3e-46
AT3G61770.1 | chr3:22864635-22866248 FORWARD LENGTH=285 124 2e-29
AT3G12685.1 | chr3:4029245-4030261 REVERSE LENGTH=214 80 4e-16
>AT1G67600.1 | chr1:25336701-25337455 REVERSE LENGTH=164
Length = 163
Score = 193 bits (490), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 87/142 (61%), Positives = 112/142 (78%)
Query: 9 NYPXXXXXXXXXXXQSSKFFTTWFKEKRWDARQLIASGGMPSSHSATVTALAVAIGIQEG 68
NYP Q KFFT+W+KE+RWD ++L+ SGGMPSSHSATVTALA+A+G+QEG
Sbjct: 18 NYPLISAVLAFTIAQFIKFFTSWYKERRWDLKRLVGSGGMPSSHSATVTALALAVGLQEG 77
Query: 69 YRSATFATSVIIACVVMHDAFGVRLHAGKQAEVLNQIVYELPEEHPLSETKPLREILGHT 128
+ + FA ++++ +VM+DA GVRLHAG+QAEVLNQIVYELP EHPL+ET+PLRE+LGHT
Sbjct: 78 FGGSHFAIALVLTTIVMYDATGVRLHAGRQAEVLNQIVYELPAEHPLAETRPLRELLGHT 137
Query: 129 VPQVVAGCIIGILIAVVMRLAL 150
PQV+AG ++GI AVV L +
Sbjct: 138 PPQVIAGGMLGISTAVVGYLVI 159
>AT1G24350.3 | chr1:8639098-8640313 REVERSE LENGTH=187
Length = 186
Score = 183 bits (465), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 101/125 (80%)
Query: 9 NYPXXXXXXXXXXXQSSKFFTTWFKEKRWDARQLIASGGMPSSHSATVTALAVAIGIQEG 68
NYP Q K FT+W++E+RWD +QLI SGGMPSSHSATVTALAVAIG+QEG
Sbjct: 22 NYPLISAVTSFTIAQFIKLFTSWYRERRWDLKQLIGSGGMPSSHSATVTALAVAIGLQEG 81
Query: 69 YRSATFATSVIIACVVMHDAFGVRLHAGKQAEVLNQIVYELPEEHPLSETKPLREILGHT 128
+ + FA ++I+A VVM+DA GVRLHAG+QAEVLNQIVYELP EHPL+E++PLRE+LGHT
Sbjct: 82 FGGSHFAIALILASVVMYDATGVRLHAGRQAEVLNQIVYELPAEHPLAESRPLRELLGHT 141
Query: 129 VPQVV 133
PQ+V
Sbjct: 142 PPQIV 146
>AT3G21610.1 | chr3:7609377-7610601 REVERSE LENGTH=175
Length = 174
Score = 180 bits (456), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/139 (61%), Positives = 105/139 (75%)
Query: 9 NYPXXXXXXXXXXXQSSKFFTTWFKEKRWDARQLIASGGMPSSHSATVTALAVAIGIQEG 68
N P Q K FT W+KEKRWD++++I+SGGMPSSHSATVTALAVAIG +EG
Sbjct: 33 NLPIFSAFLAFALAQFLKVFTNWYKEKRWDSKRMISSGGMPSSHSATVTALAVAIGFEEG 92
Query: 69 YRSATFATSVIIACVVMHDAFGVRLHAGKQAEVLNQIVYELPEEHPLSETKPLREILGHT 128
+ FA +V++ACVVM+DA GVRLHAG+QAE+LNQIV E P EHPLS +PLRE+LGHT
Sbjct: 93 AGAPAFAIAVVLACVVMYDASGVRLHAGRQAELLNQIVCEFPPEHPLSTVRPLRELLGHT 152
Query: 129 VPQVVAGCIIGILIAVVMR 147
QV AG I+G ++A +MR
Sbjct: 153 PIQVAAGGILGCVVAYLMR 171
>AT3G61770.1 | chr3:22864635-22866248 FORWARD LENGTH=285
Length = 284
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 23 QSSKFFTTWFKEKRWDARQLIASGGMPSSHSATVTALAVAIGIQEGYRSATFATSVIIAC 82
QSSK +F E++WD R L ASGGMPSSHSA AL ++ + G + F + +
Sbjct: 154 QSSKMVINFFIERKWDFRLLYASGGMPSSHSALCMALTTSVALCHGVADSLFPVCLGFSL 213
Query: 83 VVMHDAFGVRLHAGKQAEVLNQIVYELPEEHPLSETKPLREILGHTVPQVVAGCIIGILI 142
+VM+DA GVR HAG QAEVLN I+ +L E HP+S+ K L+E+LGHT QV+AG ++GI+I
Sbjct: 214 IVMYDAIGVRRHAGMQAEVLNLIIRDLFEGHPISQRK-LKELLGHTPSQVLAGALVGIVI 272
Query: 143 A 143
A
Sbjct: 273 A 273
>AT3G12685.1 | chr3:4029245-4030261 REVERSE LENGTH=214
Length = 213
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 19/141 (13%)
Query: 23 QSSKFFTTW-FKEKRWDARQLIASGGMPSSHSATVTALAVAIGIQEGYRSATFATSVIIA 81
Q SK FT+ K D R + +GG PS+HS++V A A AI + G+ + F +V+ A
Sbjct: 67 QLSKPFTSVVLYGKNLDFRSVFQAGGFPSTHSSSVVAAATAIAFERGFADSIFGLTVVYA 126
Query: 82 CVVMHDAFGVRLHAGKQAEVLNQIVYELPEEHPLS----ETK--------------PLRE 123
++M+DA GVR GK A+VLN++ +S E+ PL+E
Sbjct: 127 GLIMYDAQGVRREVGKHAKVLNKLTANARRSEVMSLKGNESNKALTSEEISEEIAPPLKE 186
Query: 124 ILGHTVPQVVAGCIIGILIAV 144
+GHT +V+AG + G L+ +
Sbjct: 187 SIGHTEVEVIAGALFGFLVTL 207
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,784,447
Number of extensions: 91660
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 5
Length of query: 153
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 63
Effective length of database: 8,639,129
Effective search space: 544265127
Effective search space used: 544265127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)