Os04g0486500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mitotic spindle checkpoint protein MAD2.
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Os04g0486500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mitotic spindle checkpoint protein MAD2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.25 | 0.645 | 4.9 | -0.6 | 1.16 | -0.72 | 0.914 | 0.943 | -0.211 | 18.6 | 70.69 | 1329 | -- | -- |
| 189.94 | 0.642 | 4.88 | -0.436 | 1.16 | -0.682 | 0.949 | -- | -0.172 | 18.5 | 71.6 | 1299 | -- | -- |
| 190.32 | 0.643 | 4.9 | -0.618 | 1.16 | -0.716 | -- | 0.973 | -0.211 | 18.6 | 71 | 1328 | -- | -- |
| 192.09 | 0.646 | 4.88 | -0.45 | 1.16 | -0.675 | -- | -- | -0.168 | 18.6 | 71.84 | 1299 | -- | -- |
| 214.07 | 0.681 | 4.81 | -0.417 | -- | -1.18 | -- | -0.321 | 0.0321 | -- | 72 | 648 | -- | -- |
| 206.77 | 0.674 | 4.86 | -0.297 | 1.13 | -- | 0.851 | -- | -0.0664 | 18.9 | -- | -- | -- | -- |
| 208.6 | 0.676 | 4.86 | -0.313 | 1.13 | -- | -- | -- | -0.0646 | 18.9 | -- | -- | -- | -- |
| 210.98 | 0.677 | 4.85 | -0.443 | -- | -1.28 | -- | -- | -0.135 | -- | 74.91 | 661 | -- | -- |
| 197.3 | 0.654 | 4.87 | -- | 1.16 | -0.619 | -- | -- | -0.105 | 18.6 | 71.94 | 1300 | -- | -- |
| 276.12 | 0.776 | 4.84 | -0.337 | -- | -- | -- | -- | -0.0859 | -- | -- | -- | -- | -- |
| 211.18 | 0.68 | 4.85 | -- | 1.14 | -- | -- | -- | -0.0298 | 18.9 | -- | -- | -- | -- |
| 216.18 | 0.685 | 4.84 | -- | -- | -1.26 | -- | -- | -0.1 | -- | 74 | 658 | -- | -- |
| 279.1 | 0.78 | 4.83 | -- | -- | -- | -- | -- | -0.0485 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 181.13 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 2 | 181.57 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 11 | 181.67 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 12 | 181.69 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 17 | 181.71 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 33 | 181.83 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 47 | 181.83 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 52 | 182.07 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 101 | 182.17 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 119 | 182.22 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 148 | 182.35 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 204 | 182.64 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 217 | 182.73 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 219 | 182.74 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 221 | 182.77 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 22 | 4 |
| 238 | 182.78 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 267 | 182.84 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 21 |
| 271 | 182.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 308 | 183.02 | temperature | 30.0 | 43200 | > th | dose dependent | no | NA | NA |
| 338 | 183.02 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 17 |
| 435 | 183.05 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 15 |
| 438 | 183.06 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 17 |
| 454 | 183.07 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 465 | 183.10 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 466 | 183.10 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 477 | 183.14 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 501 | 183.18 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 16 |
| 548 | 183.23 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 553 | 183.24 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 557 | 183.25 | temperature | 30.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 575 | 183.27 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 23 |
| 577 | 183.28 | temperature | 30.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 578 | 183.28 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 588 | 183.29 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 23 |
| 594 | 183.31 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 595 | 183.31 | wind | 5.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 609 | 183.35 | wind | 3.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 614 | 183.36 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 619 | 183.37 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 631 | 183.39 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 17 |
| 638 | 183.41 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 650 | 183.44 | wind | 1.0 | 43200 | < th | dose dependent | no | NA | NA |
| 656 | 183.46 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 676 | 183.51 | wind | 3.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 687 | 183.53 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 695 | 183.54 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 21 |
| 699 | 183.55 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 793 | 183.67 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 831 | 183.74 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 896 | 183.83 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 907 | 183.85 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 21 |
| 910 | 183.86 | wind | 1.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 911 | 183.86 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 936 | 183.89 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 15 | 22 |