BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0486500 Os04g0486500|AK111976
         (207 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25980.1  | chr3:9503232-9504402 FORWARD LENGTH=210            360   e-100

>AT3G25980.1 | chr3:9503232-9504402 FORWARD LENGTH=210
          Length = 209

 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/208 (83%), Positives = 188/208 (90%), Gaps = 1/208 (0%)

Query: 1   MASRTAS-KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFTKVKKYGLTMLLTQDE 59
           MAS+TA+ KDIITL GSAAIVSEFF YAANSILYNR VYPEESF KVKKYGL MLL +DE
Sbjct: 1   MASKTAAAKDIITLHGSAAIVSEFFCYAANSILYNRAVYPEESFVKVKKYGLPMLLIEDE 60

Query: 60  GVKTFIANLNTQLSEWLEAGKLQRIVLVIMSKATSEVLERWNFSIQTDPEVVDKGVIKEK 119
            VK+F++NL +Q+SEWLEAGKLQR+VLVIMSKAT EVLERWNF I+TD EVVDKGV +EK
Sbjct: 61  SVKSFMSNLTSQISEWLEAGKLQRVVLVIMSKATGEVLERWNFRIETDNEVVDKGVSREK 120

Query: 120 SDKEIMREIQAIMRQVASCITYLPCLDEPCIFDVLAYTDMDVAVPFTWVESDAKLIENPQ 179
           SDKEIMREIQAIMRQVAS +TYLPCLDE C+FDVLAYTD DVAVPFTW+ESD KLI NPQ
Sbjct: 121 SDKEIMREIQAIMRQVASSVTYLPCLDETCVFDVLAYTDTDVAVPFTWIESDPKLIANPQ 180

Query: 180 MVKLHSFDTKIHKVDTLVSYKVDEWDEE 207
           MVKLH FDTKIHKVDTLVSYK DEWDEE
Sbjct: 181 MVKLHGFDTKIHKVDTLVSYKNDEWDEE 208



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,116,571
Number of extensions: 153145
Number of successful extensions: 442
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 113
Effective length of database: 8,529,465
Effective search space: 963829545
Effective search space used: 963829545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)