Os04g0486400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RML1 protein.
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Os04g0486400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RML1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.74 | 0.161 | 11.4 | 0.105 | 0.298 | 0.00305 | 0.483 | -2.7 | 0.0666 | 5.38 | 30.1 | 3385 | -- | -- |
| 12.99 | 0.168 | 11.4 | 0.522 | 0.321 | -0.162 | 0.436 | -- | 0.173 | 5.52 | 29.7 | 12065 | -- | -- |
| 12.32 | 0.163 | 11.4 | 0.109 | 0.301 | 0.00252 | -- | -2.67 | 0.0652 | 5.44 | 30.2 | 3384 | -- | -- |
| 12.92 | 0.167 | 11.3 | 0.56 | 0.303 | -0.277 | -- | -- | 0.296 | 5.44 | 31.1 | 16355 | -- | -- |
| 16.99 | 0.193 | 11.4 | 0.282 | -- | -0.00361 | -- | -2.63 | 0.106 | -- | 30.2 | 3384 | -- | -- |
| 14.95 | 0.181 | 11.4 | 0.436 | 0.287 | -- | 0.455 | -- | 0.122 | 5.62 | -- | -- | -- | -- |
| 15.45 | 0.184 | 11.4 | 0.438 | 0.29 | -- | -- | -- | 0.12 | 5.67 | -- | -- | -- | -- |
| 16.38 | 0.188 | 11.4 | 0.526 | -- | -0.322 | -- | -- | 0.0916 | -- | 29.6 | 2029 | -- | -- |
| 19.89 | 0.209 | 11.4 | -- | 0.27 | -0.168 | -- | -- | 0.0595 | 5.83 | 31.1 | 16355 | -- | -- |
| 19.81 | 0.208 | 11.4 | 0.448 | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
| 20.52 | 0.212 | 11.4 | -- | 0.297 | -- | -- | -- | 0.0715 | 5.61 | -- | -- | -- | -- |
| 23.21 | 0.224 | 11.4 | -- | -- | -0.238 | -- | -- | 0.0885 | -- | 29.23 | 1980 | -- | -- |
| 25.09 | 0.234 | 11.4 | -- | -- | -- | -- | -- | 0.0776 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 4 | 11.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 10 | 11.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 14 | 11.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 20 | 11.79 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 68 | 11.83 | temperature | 30 | 4320 | < th | dose independent | sin | 8 | NA |
| 69 | 11.84 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 111 | 11.86 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 21 |
| 119 | 11.87 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 167 | 11.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 21 |
| 288 | 11.92 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 295 | 11.93 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 377 | 11.93 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 22 |
| 386 | 11.93 | temperature | 30 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 387 | 11.93 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 399 | 11.94 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 450 | 11.94 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 20 |
| 501 | 11.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 12 | 23 |
| 636 | 11.98 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 755 | 12.00 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 19 |
| 808 | 12.01 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 924 | 12.03 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 1 |