BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0486400 Os04g0486400|AK103296
(385 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13450.1 | chr1:4612999-4615115 REVERSE LENGTH=407 388 e-108
AT3G25990.1 | chr3:9504846-9506703 REVERSE LENGTH=373 375 e-104
AT2G38250.1 | chr2:16018384-16019500 FORWARD LENGTH=290 64 2e-10
AT5G01380.1 | chr5:155784-157451 REVERSE LENGTH=324 62 6e-10
AT1G76880.1 | chr1:28865594-28867931 FORWARD LENGTH=604 56 3e-08
AT1G76890.2 | chr1:28873211-28875203 REVERSE LENGTH=576 55 5e-08
AT5G63420.1 | chr5:25400515-25405807 FORWARD LENGTH=912 53 3e-07
AT1G33240.1 | chr1:12051859-12054320 REVERSE LENGTH=670 52 5e-07
AT5G28300.1 | chr5:10292789-10295101 REVERSE LENGTH=620 52 7e-07
AT5G47660.1 | chr5:19313008-19314636 FORWARD LENGTH=399 50 2e-06
>AT1G13450.1 | chr1:4612999-4615115 REVERSE LENGTH=407
Length = 406
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/347 (56%), Positives = 247/347 (71%), Gaps = 27/347 (7%)
Query: 42 PKKRAETWVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKW 101
PKKRAETWVQDET LI RR MD FNTSKSNKHLWE IS++MRE+GFDRSPTMCTDKW
Sbjct: 80 PKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKW 139
Query: 102 RNLLKEFKKARSHARXXXXXXXXXXXXXXXXXNCPAKMACYKEIDDLLKRRXXXXXXXXX 161
RNLLKEFKKA+ H R N AKM+ YKEI+D+L+ R
Sbjct: 140 RNLLKEFKKAKHHDR----------------GNGSAKMSYYKEIEDILRER---SKKVTP 180
Query: 162 XXXXXXXXXXTVTSKIDSYLQF-DKGFEDASIPFGPVEASGRSLLSVEDRLEPDSHPLAL 220
++K+DS++QF DKGF+D SI FG VEA+GR L++E RL+ D HPLA+
Sbjct: 181 PQYNKSPNTPPTSAKVDSFMQFTDKGFDDTSISFGSVEANGRPALNLERRLDHDGHPLAI 240
Query: 221 T--ADAVATNGVNPWNWRDTSTNGGDNQ-VTFGGRVILVKWGDYTKRIGIDGTADAIKEA 277
T DAVA NGV PWNWR+T NG D+ FGGRVI VK+GDYT+RIG+DG+A+AIKE
Sbjct: 241 TTAVDAVAANGVTPWNWRETPGNGDDSHGQPFGGRVITVKFGDYTRRIGVDGSAEAIKEV 300
Query: 278 IKSAFGLRTRRAFWLEDEDEVVRSLDRDMPVGTYTLHLDTGMTIKLYMFENDE---VRTE 334
I+SAFGLRTRRAFWLEDED+++R LDRDMP+G Y L LD G+ I++ ++ V +E
Sbjct: 301 IRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLDDGLAIRVCHYDESNQLPVHSE 360
Query: 335 DKTFYTEEDFRDFLSRRGWTLLREYSGYRIADTLDDLRPGVIYEGMR 381
+K FYTEED+R+FL+R+GW+ L + G+R + +DDL+PG +Y G+R
Sbjct: 361 EKIFYTEEDYREFLARQGWSSL-QVDGFRNIENMDDLQPGAVYRGVR 406
>AT3G25990.1 | chr3:9504846-9506703 REVERSE LENGTH=373
Length = 372
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/344 (54%), Positives = 237/344 (68%), Gaps = 23/344 (6%)
Query: 42 PKKRAETWVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKW 101
PKKRAETW QDET LI+LRREMD+ FNTSKSNKHLWE IS +MRE+GFDRSP+MCTDKW
Sbjct: 48 PKKRAETWAQDETRTLISLRREMDNLFNTSKSNKHLWEQISKKMREKGFDRSPSMCTDKW 107
Query: 102 RNLLKEFKKARSHARXXXXXXXXXXXXXXXXXNCPAKMACYKEIDDLLKRRXXXXXXXXX 161
RN+LKEFKKA+ H KM+ Y EI+D+ + R
Sbjct: 108 RNILKEFKKAKQH-------------EDKATSGGSTKMSYYNEIEDIFRERKKKVAFYKS 154
Query: 162 XXXXXXXXXXTVTSKIDSYLQF-DKGFEDASIPFGPVEASGRSLLSVEDRLEPDSHPLAL 220
++K+DS++QF DKGFED I F VEA+GR L++E L+ D PL +
Sbjct: 155 PATTTPS-----SAKVDSFMQFTDKGFEDTGISFTSVEANGRPTLNLETELDHDGLPLPI 209
Query: 221 TADAVATNGVNPWNWRDTSTNGGDNQVTFGGRVILVKWGDYTKRIGIDGTADAIKEAIKS 280
AD + NGV PWNWRDT NG D Q F GR+I VK+GDYT+R+GIDGTA+AIKEAI+S
Sbjct: 210 AADPITANGVPPWNWRDTPGNGVDGQ-PFAGRIITVKFGDYTRRVGIDGTAEAIKEAIRS 268
Query: 281 AFGLRTRRAFWLEDEDEVVRSLDRDMPVGTYTLHLDTGMTIKLYMFENDE---VRTEDKT 337
AF LRTRRAFWLEDE++V+RSLDRDMP+G Y L +D G+ +++ ++ + V E+K
Sbjct: 269 AFRLRTRRAFWLEDEEQVIRSLDRDMPLGNYILRIDEGIAVRVCHYDESDPLPVHQEEKI 328
Query: 338 FYTEEDFRDFLSRRGWTLLREYSGYRIADTLDDLRPGVIYEGMR 381
FYTEED+RDFL+RRGWT LRE+ ++ D +D+L+ G +Y GMR
Sbjct: 329 FYTEEDYRDFLARRGWTCLREFDAFQNIDNMDELQSGRLYRGMR 372
>AT2G38250.1 | chr2:16018384-16019500 FORWARD LENGTH=290
Length = 289
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%)
Query: 45 RAETWVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNL 104
R W +ET LI +R E+D F +K NK LWE IS +MR++ F RSP C KW+NL
Sbjct: 38 RFPQWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNL 97
Query: 105 LKEFK 109
+ FK
Sbjct: 98 VTRFK 102
>AT5G01380.1 | chr5:155784-157451 REVERSE LENGTH=324
Length = 323
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 44 KRAETWVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRN 103
+R W +ET L+A+R E+D F +K NK LWE ++A+M ++GF RS C KW+N
Sbjct: 47 ERIPQWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKN 106
Query: 104 LLKEFK 109
L+ +K
Sbjct: 107 LVTRYK 112
>AT1G76880.1 | chr1:28865594-28867931 FORWARD LENGTH=604
Length = 603
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 49 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEF 108
W + E LI LR +DS + + LWE ISA MR GF+R+ C +KW N+ K F
Sbjct: 409 WPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYF 468
Query: 109 KKAR 112
KK +
Sbjct: 469 KKVK 472
>AT1G76890.2 | chr1:28873211-28875203 REVERSE LENGTH=576
Length = 575
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 49 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEF 108
W + E LI +R+ +++++ + + LWE ISA MR G++RS C +KW N+ K F
Sbjct: 398 WPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYF 457
Query: 109 KKAR 112
KK +
Sbjct: 458 KKVK 461
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 49 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEF 108
W + ETL L+ +R EMD F S LWE IS +M E G+ RS C +K+ N+ K
Sbjct: 42 WPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMELGYKRSSKKCKEKFENVYKYH 101
Query: 109 KKAR 112
K+ +
Sbjct: 102 KRTK 105
>AT5G63420.1 | chr5:25400515-25405807 FORWARD LENGTH=912
Length = 911
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 42 PKK-RAETWVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDK 100
PK+ R W +E +I +R E+ S F K LWE IS+ + +G +RSP C
Sbjct: 813 PKRVRKNKWKPEEIKKVIRMRGELHSRFQVVKGRMALWEEISSNLSAEGINRSPGQCKSL 872
Query: 101 WRNLLKEFKKARSHAR 116
W +L+++++++++ R
Sbjct: 873 WASLIQKYEESKADER 888
>AT1G33240.1 | chr1:12051859-12054320 REVERSE LENGTH=670
Length = 669
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 49 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEF 108
W ++ETL L+ +R +MDS F + LWE +S ++ E G+ RS C +K+ N+ K +
Sbjct: 63 WPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENVQKYY 122
Query: 109 KKAR 112
K+ +
Sbjct: 123 KRTK 126
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 49 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEF 108
W + E L LI LR M+ + + LWE IS M+ G++R+ C +KW N+ K +
Sbjct: 436 WPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYY 495
Query: 109 KKAR 112
KK +
Sbjct: 496 KKVK 499
>AT5G28300.1 | chr5:10292789-10295101 REVERSE LENGTH=620
Length = 619
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 49 WVQDETLCLIALRREM-----DSH-----FNTSKSNKHLWEAISARMREQGFDRSPTMCT 98
W +DE L LI +RR + D H +TS LWE IS +M E G+ RS C
Sbjct: 460 WPKDEVLALINIRRSISNMNDDDHKDENSLSTSSKAVPLWERISKKMLEIGYKRSAKRCK 519
Query: 99 DKWRNLLKEFKKAR 112
+KW N+ K F+K +
Sbjct: 520 EKWENINKYFRKTK 533
>AT5G47660.1 | chr5:19313008-19314636 FORWARD LENGTH=399
Length = 398
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 49 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEF 108
W Q+E LI+ R +++ +K +W+ ISARM+E+G++RS C +KW N+ K +
Sbjct: 304 WPQEEVQALISSRSDVEEKTGINKG--AIWDEISARMKERGYERSAKKCKEKWENMNKYY 361
Query: 109 KKA 111
++
Sbjct: 362 RRV 364
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,963,087
Number of extensions: 278692
Number of successful extensions: 614
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 15
Length of query: 385
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 285
Effective length of database: 8,364,969
Effective search space: 2384016165
Effective search space used: 2384016165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)