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Os04g0485400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nucleotide-binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.61 (0.0229) R2 : 0.752
β1 : 1.41 (0.0839) R2dD : 0.159 R2D : 0.102
β2 : 1.95 (0.0587) R2dC : 0.6 R2C : 0.561
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.464 (0.0489) R2dN8 : 0.0658 R2N8 : 0.00651
σ : 0.431
deviance : 84.69
__
_____
C
peak time of C : 16.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.68 0.395 8.59 1.46 1.89 0.587 1.03 0.0623 0.561 16.5 29.87 1297 -- --
70.67 0.392 8.59 1.46 1.89 0.584 1.02 -- 0.561 16.5 29.87 1289 -- --
73.5 0.399 8.59 1.45 1.9 0.59 -- 0.159 0.562 16.5 29.86 1297 -- --
73.54 0.399 8.59 1.46 1.89 0.588 -- -- 0.566 16.5 29.87 1290 -- --
264.11 0.757 8.59 1.4 -- 0.84 -- 0.252 0.562 -- 29.84 1300 -- --
81.76 0.424 8.61 1.4 1.94 -- 1.03 -- 0.459 16.3 -- -- -- --
84.69 0.431 8.61 1.41 1.95 -- -- -- 0.464 16.3 -- -- -- --
263.71 0.756 8.59 1.46 -- 0.808 -- -- 0.571 -- 27.25 1312 -- --
123.7 0.518 8.59 -- 1.92 0.579 -- -- 0.558 16.5 29.97 8467 -- --
288.6 0.794 8.6 1.33 -- -- -- -- 0.413 -- -- -- -- --
136.83 0.547 8.64 -- 1.92 -- -- -- 0.308 16.3 -- -- -- --
310.36 0.823 8.63 -- -- -0.654 -- -- 0.268 -- 27.25 1312 -- --
335.19 0.855 8.63 -- -- -- -- -- 0.265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.68 temperature 15.0 270 > th dose independent rect. 5 21
3 62.71 wind 5.0 270 < th dose independent rect. 2 3
5 63.25 precipitation 0.1 270 < th dose independent rect. 3 2
6 63.25 precipitation 0.1 270 < th dose dependent rect. 3 2
9 63.64 temperature 15.0 90 > th dose independent rect. 7 20
11 63.71 wind 9.0 270 < th dose dependent rect. 2 3
23 64.18 radiation 1.0 270 < th dose dependent rect. 2 3
24 64.22 wind 9.0 270 < th dose independent rect. 5 21
28 64.27 temperature 10.0 270 > th dose independent rect. 2 3
30 64.27 temperature 30.0 270 < th dose independent rect. 2 3
31 64.27 humidity 50.0 270 > th dose independent rect. 2 3
34 64.27 atmosphere 995.0 270 > th dose independent rect. 2 3
35 64.27 atmosphere 1010.0 270 < th dose independent rect. 2 3
37 64.27 radiation 20.0 270 < th dose independent rect. 2 3
41 64.27 radiation 20.0 270 < th dose dependent rect. 2 3
46 64.29 radiation 1.0 270 < th dose independent rect. 2 3
71 64.57 wind 9.0 90 < th dose independent rect. 7 20
73 64.69 wind 5.0 270 < th dose independent rect. 1 5
85 64.73 humidity 50.0 270 > th dose dependent rect. 2 3
87 64.77 precipitation 0.1 90 < th dose independent rect. 7 20
88 64.77 precipitation 0.1 90 < th dose dependent rect. 7 20
95 64.96 temperature 10.0 270 > th dose dependent rect. 3 2
106 65.21 humidity 50.0 14400 > th dose independent rect. 4 5
108 65.24 precipitation 0.1 270 < th dose independent rect. 5 21
109 65.24 precipitation 0.1 270 < th dose dependent rect. 5 21
110 65.25 wind 1.0 270 > th dose independent rect. 3 1
118 65.34 radiation 1.0 270 < th dose dependent rect. 2 16
127 65.52 precipitation 0.1 270 < th dose independent rect. 1 5
128 65.52 precipitation 0.1 270 < th dose dependent rect. 1 5
130 65.54 radiation 1.0 270 < th dose dependent rect. 2 9
135 65.59 temperature 15.0 270 > th dose independent rect. 5 10
137 65.61 atmosphere 995.0 270 > th dose independent rect. 5 21
141 65.66 wind 9.0 270 < th dose dependent rect. 1 5
147 65.71 atmosphere 995.0 90 > th dose independent rect. 7 20
152 65.73 wind 1.0 270 > th dose independent rect. 2 3
157 65.75 temperature 10.0 90 > th dose dependent rect. 6 21
159 65.76 temperature 10.0 10 > th dose dependent rect. 7 21
172 65.94 wind 7.0 10 < th dose dependent rect. 4 4
210 66.26 temperature 10.0 270 > th dose independent rect. 1 5
212 66.26 temperature 30.0 270 < th dose independent rect. 1 5
213 66.26 humidity 50.0 270 > th dose independent rect. 1 5
216 66.26 atmosphere 995.0 270 > th dose independent rect. 1 5
217 66.26 atmosphere 1015.0 270 < th dose independent rect. 1 5
218 66.26 radiation 20.0 270 < th dose independent rect. 1 5
223 66.27 wind 9.0 270 < th dose independent rect. 5 10
224 66.27 atmosphere 995.0 270 > th dose dependent rect. 2 3
229 66.31 temperature 15.0 10 > th dose independent rect. 7 21
231 66.31 radiation 40.0 270 < th dose dependent rect. 1 5
235 66.32 radiation 40.0 10 < th dose dependent rect. 4 4
268 66.43 temperature 15.0 10 > th dose independent rect. 20 8
276 66.46 atmosphere 1015.0 90 < th dose independent rect. 7 20
279 66.48 temperature 15.0 90 > th dose independent rect. 20 7
306 66.54 atmosphere 995.0 270 > th dose independent rect. 5 10
307 66.54 precipitation 0.1 270 < th dose independent rect. 15 14
309 66.54 precipitation 0.1 270 < th dose dependent rect. 15 14
310 66.55 radiation 1.0 270 < th dose independent rect. 2 15
314 66.57 precipitation 0.1 270 < th dose independent rect. 5 10
316 66.57 precipitation 0.1 270 < th dose dependent rect. 5 10
317 66.57 wind 9.0 90 < th dose dependent rect. 7 20
323 66.61 wind 9.0 270 < th dose independent rect. 15 14
329 66.63 atmosphere 1015.0 270 < th dose independent rect. 5 10
330 66.63 temperature 10.0 270 > th dose independent rect. 15 14
331 66.63 radiation 40.0 270 < th dose independent rect. 15 14
344 66.74 temperature 10.0 270 > th dose dependent rect. 1 5
348 66.76 wind 9.0 10 < th dose independent rect. 8 20
356 66.79 precipitation 0.1 10 < th dose independent rect. 4 4
358 66.79 precipitation 0.1 10 < th dose dependent rect. 4 4
362 66.80 atmosphere 1005.0 270 > th dose independent rect. 3 2
370 66.82 precipitation 0.1 90 < th dose independent rect. 19 8
373 66.82 precipitation 0.1 90 < th dose dependent rect. 19 8
374 66.83 radiation 10.0 10 < th dose independent rect. 4 3
381 66.84 radiation 1.0 270 < th dose independent rect. 2 9
395 66.89 humidity 50.0 10 > th dose dependent rect. 4 4
397 66.90 humidity 70.0 10 > th dose independent rect. 4 4
400 66.90 radiation 1.0 270 < th dose dependent sin 3 NA
407 66.93 temperature 10.0 10 > th dose independent rect. 4 4
409 66.93 temperature 30.0 10 < th dose independent rect. 4 4
410 66.93 humidity 50.0 10 > th dose independent rect. 4 4
412 66.93 atmosphere 995.0 10 > th dose independent rect. 4 4
413 66.93 atmosphere 1015.0 10 < th dose independent rect. 4 4
419 66.95 radiation 30.0 10 < th dose independent rect. 4 4
421 66.95 humidity 50.0 90 > th dose dependent rect. 20 7
434 66.96 wind 9.0 10 < th dose independent rect. 20 8
439 66.97 temperature 30.0 10 < th dose independent rect. 20 8
440 66.97 humidity 50.0 10 > th dose independent rect. 20 8
443 66.97 atmosphere 995.0 10 > th dose independent rect. 20 8
444 66.97 radiation 1.0 10 < th dose independent rect. 20 8
449 66.97 temperature 10.0 10 > th dose independent rect. 4 16
451 66.97 atmosphere 1015.0 10 < th dose independent rect. 4 16
452 66.97 radiation 1.0 10 < th dose dependent rect. 20 8
500 67.05 wind 9.0 90 < th dose independent rect. 20 7
502 67.05 atmosphere 1010.0 10 < th dose independent rect. 6 22
504 67.05 atmosphere 1000.0 10 > th dose dependent rect. 4 4
508 67.06 temperature 30.0 90 < th dose independent rect. 20 7
509 67.06 humidity 50.0 90 > th dose independent rect. 20 7
512 67.06 atmosphere 995.0 90 > th dose independent rect. 20 7
513 67.06 radiation 1.0 90 < th dose independent rect. 20 7
519 67.06 temperature 10.0 90 > th dose independent rect. 3 17
520 67.06 atmosphere 1015.0 90 < th dose independent rect. 3 17
521 67.06 radiation 1.0 90 < th dose dependent rect. 20 7
579 67.14 precipitation 0.1 10 < th dose independent rect. 4 16
584 67.14 precipitation 0.1 10 < th dose dependent rect. 4 16
626 67.26 wind 9.0 10 < th dose independent rect. 4 16
639 67.31 precipitation 0.1 90 < th dose independent rect. 3 16
641 67.31 precipitation 0.1 90 < th dose dependent rect. 3 16
673 67.39 precipitation 0.1 10 < th dose independent rect. 8 19
676 67.39 precipitation 0.1 10 < th dose dependent rect. 8 19
691 67.40 wind 9.0 90 < th dose dependent rect. 20 7
721 67.48 atmosphere 995.0 10 > th dose independent rect. 8 20
741 67.53 temperature 10.0 90 > th dose dependent rect. 20 7
766 67.58 temperature 10.0 10 > th dose dependent rect. 4 3
787 67.62 atmosphere 1015.0 270 < th dose independent rect. 5 21
803 67.65 humidity 50.0 10 > th dose dependent rect. 20 8
859 67.70 atmosphere 1005.0 10 > th dose independent rect. 4 4
906 67.83 wind 9.0 1440 < th dose independent rect. 4 6
925 67.89 temperature 10.0 10 > th dose dependent rect. 20 8
941 67.95 atmosphere 1015.0 90 < th dose dependent rect. 3 4
947 67.96 temperature 30.0 90 < th dose dependent rect. 4 1
990 68.05 wind 7.0 43200 > th dose dependent rect. 10 3
999 68.07 wind 3.0 43200 > th dose dependent sin 5 NA