BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0485400 Os04g0485400|AK109290
         (63 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50960.1  | chr5:20734267-20735824 FORWARD LENGTH=351           82   4e-17

>AT5G50960.1 | chr5:20734267-20735824 FORWARD LENGTH=351
          Length = 350

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 2/58 (3%)

Query: 1  MENGGGDVPENANDHCPGTQSEAAGKADACAGCPNQQICATAPKGPDPACDALLRGVS 58
          MENG  D+PE+AN+HCPG QSE+AGK+D+CAGCPNQ+ CATAPKGPDP   A+   +S
Sbjct: 1  MENG--DIPEDANEHCPGPQSESAGKSDSCAGCPNQEACATAPKGPDPDLVAIAERMS 56



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.134    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,602,412
Number of extensions: 50020
Number of successful extensions: 59
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 63
Length of database: 11,106,569
Length adjustment: 36
Effective length of query: 27
Effective length of database: 10,119,593
Effective search space: 273229011
Effective search space used: 273229011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)