Os04g0481900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0481900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.49 | 0.667 | 5.25 | 0.897 | 0.571 | -0.5 | 0.546 | 1.49 | 0.64 | 11.9 | 19.88 | 15 | -- | -- |
| 208.45 | 0.672 | 5.22 | 1.07 | 0.546 | -0.726 | 0.143 | -- | 0.694 | 11.8 | 19.3 | 35 | -- | -- |
| 202.54 | 0.663 | 5.25 | 0.943 | 0.568 | -0.513 | -- | 1.3 | 0.644 | 11.8 | 19.8 | 18 | -- | -- |
| 208.46 | 0.672 | 5.22 | 1.08 | 0.547 | -0.724 | -- | -- | 0.687 | 11.6 | 19.2 | 35 | -- | -- |
| 221.37 | 0.697 | 5.26 | 0.912 | -- | -0.695 | -- | 1.22 | 0.618 | -- | 19.8 | 18 | -- | -- |
| 224.2 | 0.702 | 5.19 | 1.3 | 0.675 | -- | -0.0159 | -- | 0.794 | 11.9 | -- | -- | -- | -- |
| 224.2 | 0.701 | 5.19 | 1.29 | 0.675 | -- | -- | -- | 0.794 | 11.9 | -- | -- | -- | -- |
| 226.14 | 0.7 | 5.24 | 1.01 | -- | -0.907 | -- | -- | 0.659 | -- | 19.22 | 33 | -- | -- |
| 237.45 | 0.718 | 5.23 | -- | 0.493 | -1.01 | -- | -- | 0.601 | 11.9 | 19.3 | 34 | -- | -- |
| 252.87 | 0.743 | 5.21 | 1.27 | -- | -- | -- | -- | 0.784 | -- | -- | -- | -- | -- |
| 268.4 | 0.766 | 5.23 | -- | 0.659 | -- | -- | -- | 0.649 | 11.8 | -- | -- | -- | -- |
| 251.11 | 0.738 | 5.27 | -- | -- | -1.14 | -- | -- | 0.516 | -- | 19.2 | 32 | -- | -- |
| 295.71 | 0.803 | 5.24 | -- | -- | -- | -- | -- | 0.643 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 3 | 194.40 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 4 | 194.46 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 5 | 194.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 6 | 194.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 20 | 195.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 21 | 195.20 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 25 | 195.29 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 28 | 195.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 58 | 195.95 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 60 | 196.05 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 63 | 196.10 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 89 | 196.55 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 96 | 196.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 97 | 196.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 138 | 197.16 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 141 | 197.22 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |
| 169 | 197.55 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 170 | 197.57 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 178 | 197.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 181 | 197.65 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 214 | 197.84 | humidity | 90 | 14400 | < th | dose independent | sin | 4 | NA |
| 219 | 197.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 233 | 197.93 | radiation | 10 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 237 | 197.96 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 242 | 197.97 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 264 | 198.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 275 | 198.11 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 280 | 198.15 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 305 | 198.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 319 | 198.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 376 | 198.55 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 380 | 198.56 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 400 | 198.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 401 | 198.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 414 | 198.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 422 | 198.70 | radiation | 10 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 436 | 198.74 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 20 |
| 437 | 198.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 485 | 198.90 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 493 | 198.93 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 497 | 198.95 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 507 | 198.98 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 511 | 198.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 514 | 199.00 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 526 | 199.02 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 556 | 199.09 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 563 | 199.13 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 592 | 199.20 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 598 | 199.22 | radiation | 10 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 625 | 199.28 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 627 | 199.28 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 15 |
| 652 | 199.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 664 | 199.37 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 667 | 199.38 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 681 | 199.38 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 704 | 199.41 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 714 | 199.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 773 | 199.53 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 798 | 199.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 841 | 199.66 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 845 | 199.66 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 23 |
| 847 | 199.67 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 854 | 199.68 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 881 | 199.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 883 | 199.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 18 |
| 889 | 199.74 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 899 | 199.75 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 901 | 199.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 945 | 199.86 | humidity | 90 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 950 | 199.87 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 20 |
| 989 | 199.94 | humidity | 90 | 14400 | < th | dose independent | rect. | 8 | 23 |