Os04g0481300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Generic methyltransferase domain containing protein.
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Os04g0481300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Generic methyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.42 | 0.468 | 12.4 | -1.3 | 0.375 | -0.67 | -1.45 | 0.152 | -0.971 | 19.7 | 71 | 1463 | -- | -- |
| 98.88 | 0.463 | 12.4 | -1.2 | 0.318 | -0.718 | -1.51 | -- | -0.927 | 19.6 | 73.02 | 1472 | -- | -- |
| 104.64 | 0.476 | 12.4 | -1.23 | 0.327 | -0.711 | -- | -0.0798 | -0.986 | 19.8 | 73 | 1484 | -- | -- |
| 104.42 | 0.476 | 12.4 | -1.23 | 0.38 | -0.698 | -- | -- | -0.96 | 19.4 | 73.48 | 1450 | -- | -- |
| 109.3 | 0.487 | 12.4 | -1.27 | -- | -0.741 | -- | 0.735 | -0.927 | -- | 73.85 | 839 | -- | -- |
| 115.5 | 0.504 | 12.4 | -1.14 | 0.371 | -- | -1.48 | -- | -0.865 | 19.4 | -- | -- | -- | -- |
| 121.47 | 0.516 | 12.4 | -1.11 | 0.371 | -- | -- | -- | -0.867 | 19.2 | -- | -- | -- | -- |
| 108.69 | 0.486 | 12.4 | -1.21 | -- | -0.948 | -- | -- | -0.951 | -- | 73.68 | 2092 | -- | -- |
| 135.44 | 0.542 | 12.4 | -- | 0.375 | -0.959 | -- | -- | -0.964 | 19 | 72.73 | 31841 | -- | -- |
| 128.76 | 0.53 | 12.4 | -1.12 | -- | -- | -- | -- | -0.873 | -- | -- | -- | -- | -- |
| 153.9 | 0.58 | 12.3 | -- | 0.383 | -- | -- | -- | -0.743 | 19 | -- | -- | -- | -- |
| 136.92 | 0.545 | 12.3 | -- | -- | -1.03 | -- | -- | -0.722 | -- | 65.81 | 47520 | -- | -- |
| 161.61 | 0.593 | 12.3 | -- | -- | -- | -- | -- | -0.749 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.82 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 2 | 89.29 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 45 | 91.84 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 61 | 92.26 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 74 | 92.60 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 83 | 92.74 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 87 | 92.86 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 95 | 92.96 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 103 | 93.12 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 158 | 94.35 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 180 | 94.68 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 183 | 94.71 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 193 | 94.76 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 240 | 95.22 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 340 | 96.13 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 363 | 96.30 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 370 | 96.35 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 371 | 96.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 393 | 96.48 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 8 |
| 416 | 96.66 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 435 | 96.73 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 439 | 96.74 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 16 |
| 458 | 96.85 | precipitation | 0.1 | 270 | > th | dose independent | sin | 10 | NA |
| 533 | 97.11 | humidity | 90.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 559 | 97.16 | precipitation | 0.1 | 270 | < th | dose independent | sin | 10 | NA |
| 560 | 97.16 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 10 | NA |
| 565 | 97.19 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 570 | 97.21 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 610 | 97.37 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 639 | 97.47 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 10 |
| 681 | 97.61 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 700 | 97.72 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 23 | 16 |
| 729 | 97.80 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 12 |
| 764 | 97.86 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 765 | 97.87 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 785 | 97.94 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 797 | 97.99 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 801 | 98.00 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 14 |
| 803 | 98.00 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 811 | 98.03 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 824 | 98.05 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 839 | 98.09 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 3 | NA |
| 865 | 98.18 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 9 | NA |
| 953 | 98.35 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 22 | NA |