BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0481300 Os04g0481300|AK067096
(268 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01660.1 | chr3:245532-246432 FORWARD LENGTH=274 325 2e-89
AT4G29590.1 | chr4:14512736-14514404 REVERSE LENGTH=318 147 7e-36
>AT3G01660.1 | chr3:245532-246432 FORWARD LENGTH=274
Length = 273
Score = 325 bits (832), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 153/236 (64%), Positives = 186/236 (78%), Gaps = 7/236 (2%)
Query: 33 GGIRRLVLTPEGRAKLDARPDRDFYAFPRLVKHVDDGFLAALADLYRERLRPGWDVLDLM 92
G I+RLVL EGR KL+A PDR+FY++PR V HVDD F+++L +LYR RLRPG VLDLM
Sbjct: 43 GRIQRLVLNNEGRTKLNADPDREFYSYPRFVNHVDDSFISSLTELYRNRLRPGSTVLDLM 102
Query: 93 SSWVSHLPPERELPLRRVVGHGLNAQELAKNPRLDYFFVKDLNKEQRLELQTSSLDAVLC 152
SSWVSHLP E+ +VVGHGLNAQELA+NPRLDYFFVKDLN++Q+ E + DAVLC
Sbjct: 103 SSWVSHLP--EEVKYEKVVGHGLNAQELARNPRLDYFFVKDLNEDQKFEFEDKYFDAVLC 160
Query: 153 TVSVQYLQSPEKVFAEIFRVLKPGGVCIVSFSNRMFYEKAIGAWREGTAYSRVQLVTQYF 212
+V VQYLQ PEKVFAE++RVLKPGGV IVSFSNRMFYEKAI WR+GT YSR+QLV QYF
Sbjct: 161 SVGVQYLQQPEKVFAEVYRVLKPGGVLIVSFSNRMFYEKAIRVWRDGTEYSRIQLVVQYF 220
Query: 213 QCVDGFTEPEVVRKLPSDAAGGKPASPLDAVMRLFGMAGSSDPFYAVISYRNFKPM 268
Q ++GFT+PE++R+ P G S L +M G+A + DPF AVI+Y+NFKP+
Sbjct: 221 QSIEGFTQPEIIRQQP-----GAQISVLTRLMGFIGLASTPDPFNAVIAYKNFKPI 271
>AT4G29590.1 | chr4:14512736-14514404 REVERSE LENGTH=318
Length = 317
Score = 147 bits (370), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 43 EGRAKLDARPDRDFYAFPRLVKHVDDGFLAALADLYRERL----RPGWDVLDLMSSWVSH 98
E + D D FY PR V H+DD +AAL Y + L PG +LD+ SSWVSH
Sbjct: 111 EDFQRYDESSDSTFYEAPRFVTHIDDPAIAALTKYYSKVLPQSDTPGVSILDMCSSWVSH 170
Query: 99 LPPERELPLRRVVGHGLNAQELAKNPRLDYFFVKDLNKEQRLELQTSSLDAVLCTVSVQY 158
PP R+VG G+N +EL +NP L + V+DLN L + +S + VSV Y
Sbjct: 171 YPPGYRQ--ERIVGMGMNEEELKRNPVLTEYIVQDLNLNSNLPFEDNSFQVITNVVSVDY 228
Query: 159 LQSPEKVFAEIFRVLKPGGVCIVSFSNRMFYEKAIGAWREGTAYSRVQLVTQYFQCVDGF 218
L P +VF E+ R+LKPGG+ ++SFSNR F+ KAI W +V YF GF
Sbjct: 229 LTKPLEVFKEMNRILKPGGLALMSFSNRCFFTKAISIWTSTGDADHALIVGSYFHYAGGF 288
Query: 219 TEPEVVRKLPSDAAGGKPASPLDAVMRLFGMAGSSDPFYAVIS 261
P+ V P+ G SDP Y V S
Sbjct: 289 EAPQAVDISPN--------------------PGRSDPMYVVYS 311
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,363,538
Number of extensions: 219514
Number of successful extensions: 428
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)