Os04g0480100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant specific eukaryotic initiation factor 4B family protein.
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Os04g0480100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant specific eukaryotic initiation factor 4B family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.09 | 0.17 | 13.3 | 0.411 | 0.437 | -0.402 | -0.555 | 0.879 | 0.194 | 6.8 | 20.07 | 405 | -- | -- |
| 13.66 | 0.172 | 13.4 | 0.256 | 0.571 | -0.357 | -0.68 | -- | 0.144 | 6.24 | 14.76 | 1080 | -- | -- |
| 13.67 | 0.172 | 13.3 | 0.487 | 0.453 | -0.39 | -- | 1.3 | 0.216 | 6.56 | 19.63 | 485 | -- | -- |
| 14.79 | 0.179 | 13.4 | 0.248 | 0.572 | -0.357 | -- | -- | 0.147 | 6.23 | 14.8 | 1114 | -- | -- |
| 20.17 | 0.209 | 13.3 | 0.676 | -- | -0.796 | -- | 2.03 | 0.306 | -- | 22.27 | 458 | -- | -- |
| 15.64 | 0.185 | 13.4 | 0.153 | 0.574 | -- | -0.676 | -- | 0.0818 | 6.56 | -- | -- | -- | -- |
| 16.79 | 0.192 | 13.4 | 0.143 | 0.572 | -- | -- | -- | 0.0838 | 6.55 | -- | -- | -- | -- |
| 22.37 | 0.22 | 13.4 | 0.273 | -- | -0.628 | -- | -- | 0.162 | -- | 24.04 | 413 | -- | -- |
| 16.21 | 0.187 | 13.4 | -- | 0.575 | -0.247 | -- | -- | 0.103 | 6.29 | 13.87 | 1114 | -- | -- |
| 33.8 | 0.272 | 13.4 | 0.157 | -- | -- | -- | -- | 0.0955 | -- | -- | -- | -- | -- |
| 17.32 | 0.195 | 13.4 | -- | 0.574 | -- | -- | -- | 0.0679 | 6.53 | -- | -- | -- | -- |
| 24.18 | 0.229 | 13.4 | -- | -- | -0.586 | -- | -- | 0.121 | -- | 24.43 | 402 | -- | -- |
| 34.45 | 0.274 | 13.4 | -- | -- | -- | -- | -- | 0.0781 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 21 | 12.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 27 | 12.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 31 | 12.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 44 | 12.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 52 | 12.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 64 | 12.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 112 | 12.49 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 159 | 12.54 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 174 | 12.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 180 | 12.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 182 | 12.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 190 | 12.59 | radiation | 20 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 224 | 12.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 284 | 12.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 285 | 12.67 | radiation | 20 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 300 | 12.68 | radiation | 20 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 360 | 12.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 387 | 12.75 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 406 | 12.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 415 | 12.76 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 458 | 12.77 | radiation | 1 | 90 | > th | dose independent | rect. | 12 | 21 |
| 460 | 12.77 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 488 | 12.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 496 | 12.78 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 504 | 12.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 13 |
| 523 | 12.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 534 | 12.81 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 579 | 12.83 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 618 | 12.84 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 634 | 12.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 680 | 12.87 | radiation | 10 | 1440 | < th | dose independent | sin | 12 | NA |
| 757 | 12.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 776 | 12.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 777 | 12.90 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 803 | 12.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 804 | 12.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 842 | 12.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 853 | 12.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 877 | 12.93 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 888 | 12.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 894 | 12.93 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 926 | 12.94 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 940 | 12.95 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 965 | 12.95 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 983 | 12.95 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 985 | 12.96 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 9 |