BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0480100 Os04g0480100|J100060F14
         (398 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26400.1  | chr3:9666616-9669081 FORWARD LENGTH=533            153   2e-37
AT1G13020.1  | chr1:4440927-4443520 REVERSE LENGTH=550            132   5e-31
AT4G38710.2  | chr4:18078141-18080002 REVERSE LENGTH=466           65   7e-11

>AT3G26400.1 | chr3:9666616-9669081 FORWARD LENGTH=533
          Length = 532

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/257 (40%), Positives = 134/257 (52%), Gaps = 57/257 (22%)

Query: 155 MPSRADEADNWGTNKRFTPALGDSGRRDRFGGPSPA-------------------GRSDD 195
            PSRADE D+WG  K+  P+  D GR+ R+ G                        R+DD
Sbjct: 164 QPSRADEVDDWGKEKKPLPSF-DQGRQGRYSGDGGGFGGGGSGFGGGGGGGGGGLSRADD 222

Query: 196 IDDWSRDKKPMPSRYPSLXXXXXXXXXFRESPGFRDSPGPSDSDRWSRGGSFAPMPHNGE 255
           +D+W   K+  P R  +                               G SF     +G+
Sbjct: 223 VDNWGAGKRQAPVRSSTF------------------------------GSSFG---DSGQ 249

Query: 256 RERPRLNLDPPKRDPLATATPPAEVARNRPSPFGAARPREEVLAEKGLDWRKMETEIEQK 315
            ER RL L+P K +   + TPP     ++P+PFGAARPRE+VLAEKGLDW+K+++EIE K
Sbjct: 250 EERRRLVLEPRKVESGGSETPPVVEKTSKPNPFGAARPREDVLAEKGLDWKKIDSEIEAK 309

Query: 316 XXXXXXXXXXXXXXAHSSRPGSPGSQVS-AVGSEGAPRSRPKVNPFGNAKPREVVLQEKG 374
                         AHSSRP S  S  S + G     + RPKVNPFG+AKPREV+L+E+G
Sbjct: 310 ---KGSSQTSRPTSAHSSRPSSAQSNRSESSGLNNVVKPRPKVNPFGDAKPREVLLEEQG 366

Query: 375 KDWRKIDLELEHRAVNR 391
           KDWRK+DLELEHR V+R
Sbjct: 367 KDWRKMDLELEHRRVDR 383



>AT1G13020.1 | chr1:4440927-4443520 REVERSE LENGTH=550
          Length = 549

 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 12/167 (7%)

Query: 228 GFRDSPGPSDSDRWSRGGSFAPMPHNG--ERERPRLNLDPPKRDPLATATPPAEVARNRP 285
           GFR+S GP + DRW+RG     +P  G  + ER RL  +P K D   + TP A V  ++P
Sbjct: 240 GFRES-GP-EPDRWARG----VLPSGGGVQEERRRLVFEPRKADTEVSETPTA-VKTSKP 292

Query: 286 SPFGAARPREEVLAEKGLDWRKMETEIEQKXXXXXXXXXXXXXXAHSSRPGSPGSQVSAV 345
           SPFGAARPRE+VLAEKGLDW+K++++IE K                S++  S  S+ SA+
Sbjct: 293 SPFGAARPREQVLAEKGLDWKKLDSDIEAKKGQTSRPSSAQSSRPSSAQ--SNRSESSAL 350

Query: 346 GS-EGAPRSRPKVNPFGNAKPREVVLQEKGKDWRKIDLELEHRAVNR 391
            + E   + RPKVNPFG+AKPREV+L+E+GKDWRKID ELEHR V+R
Sbjct: 351 NNVENVVKPRPKVNPFGDAKPREVLLEEQGKDWRKIDSELEHRRVDR 397



>AT4G38710.2 | chr4:18078141-18080002 REVERSE LENGTH=466
          Length = 465

 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 88/188 (46%), Gaps = 37/188 (19%)

Query: 156 PSRADEADNWGTNKRFTPALGDS-GRRDRFGG-----PSPAGRSDDIDDWSRDKKPMPSR 209
           PSRADE DNW   K+  P  G+   RR+R  G          ++D++D W   K   P R
Sbjct: 160 PSRADEDDNWAAAKK--PISGNGFERRERGSGGGFFESQSQSKADEVDSWVSTKPSEPRR 217

Query: 210 YPSLXXXXXXXXXFRESPGF------RDSP----GPSDSDRWSR------GGSFAPMPHN 253
           +  +         F +   F      RDS     G S+SD W R        + +P P  
Sbjct: 218 F--VSSNGGGGDRFEKRGSFESLSRNRDSQYGGGGGSESDTWGRRREESGAANGSPPPSG 275

Query: 254 GERERPRLNLDPPKRDPLATAT-----PPAEVARNRP---SPFGAARPREEVLAEKGLDW 305
           G R  PRL L P +  P+A         P  V   +P   +PFG ARPREEVLAEKG DW
Sbjct: 276 GSR--PRLVLQP-RTLPVAVVEVVKPESPVLVIVEKPKGANPFGNARPREEVLAEKGQDW 332

Query: 306 RKMETEIE 313
           ++++ ++E
Sbjct: 333 KEIDEKLE 340



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,989,166
Number of extensions: 291048
Number of successful extensions: 573
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 4
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)