Os04g0479900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0479900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.34 | 0.574 | 3.08 | -0.274 | 0.282 | -0.147 | -0.416 | 2.61 | 0.213 | 21.4 | 40.32 | 282 | -- | -- |
| 152.12 | 0.579 | 3.08 | -0.327 | 0.246 | -0.244 | -0.682 | -- | 0.18 | 21.8 | 40.32 | 282 | -- | -- |
| 149.86 | 0.57 | 3.07 | -0.245 | 0.283 | -0.139 | -- | 2.82 | 0.22 | 21.9 | 40.56 | 279 | -- | -- |
| 153.65 | 0.577 | 3.08 | -0.333 | 0.266 | -0.442 | -- | -- | 0.182 | 21.7 | 55.43 | 285 | -- | -- |
| 154.34 | 0.579 | 3.07 | -0.268 | -- | -0.231 | -- | 2.75 | 0.211 | -- | 42.33 | 259 | -- | -- |
| 153.9 | 0.582 | 3.08 | -0.33 | 0.306 | -- | -0.647 | -- | 0.182 | 22.3 | -- | -- | -- | -- |
| 155.57 | 0.584 | 3.08 | -0.305 | 0.308 | -- | -- | -- | 0.183 | 22.4 | -- | -- | -- | -- |
| 156.9 | 0.586 | 3.07 | -0.3 | -- | -0.36 | -- | -- | 0.18 | -- | 42.33 | 259 | -- | -- |
| 156.57 | 0.583 | 3.07 | -- | 0.265 | -0.422 | -- | -- | 0.216 | 21.4 | 55.14 | 262 | -- | -- |
| 161.38 | 0.594 | 3.07 | -0.3 | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
| 158.03 | 0.588 | 3.07 | -- | 0.307 | -- | -- | -- | 0.217 | 22.3 | -- | -- | -- | -- |
| 159.28 | 0.59 | 3.07 | -- | -- | -0.36 | -- | -- | 0.214 | -- | 42.33 | 259 | -- | -- |
| 163.76 | 0.597 | 3.07 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.54 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 3 | 143.36 | humidity | 50.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 4 | 143.36 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 256 | 144.84 | humidity | 50.0 | 30 | < th | dose dependent | sin | 7 | NA |
| 316 | 145.20 | wind | 1.0 | 10 | < th | dose independent | rect. | 7 | 2 |
| 318 | 145.32 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 4 |
| 372 | 145.75 | wind | 3.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 378 | 145.84 | humidity | 50.0 | 10 | > th | dose independent | sin | 13 | NA |
| 400 | 145.94 | wind | 1.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 403 | 145.94 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 418 | 146.31 | radiation | 40.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 419 | 146.33 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 427 | 146.47 | humidity | 50.0 | 10 | < th | dose independent | sin | 13 | NA |
| 428 | 146.47 | humidity | 50.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 438 | 146.67 | temperature | 25.0 | 10 | > th | dose independent | rect. | 22 | 13 |
| 439 | 146.67 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 441 | 146.68 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 24 | 10 |
| 446 | 146.73 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 458 | 146.87 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 9 |
| 464 | 146.88 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 24 | 10 |
| 467 | 146.90 | wind | 3.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 479 | 146.98 | temperature | 25.0 | 30 | > th | dose independent | rect. | 3 | 7 |
| 481 | 146.98 | radiation | 40.0 | 90 | > th | dose independent | rect. | 12 | 21 |
| 490 | 147.02 | radiation | 40.0 | 90 | > th | dose independent | rect. | 12 | 4 |
| 581 | 147.19 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 14 |
| 598 | 147.25 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 15 |
| 610 | 147.31 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 12 |
| 621 | 147.41 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 622 | 147.41 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 634 | 147.44 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 642 | 147.47 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 7 |
| 643 | 147.48 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 18 |
| 646 | 147.49 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 11 |
| 652 | 147.51 | radiation | 20.0 | 270 | < th | dose independent | rect. | 5 | 4 |
| 655 | 147.51 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 10 |
| 659 | 147.52 | radiation | 40.0 | 30 | < th | dose independent | rect. | 6 | 19 |
| 694 | 147.58 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 695 | 147.58 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 726 | 147.64 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 2 |
| 746 | 147.71 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 749 | 147.71 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 752 | 147.71 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 23 | 10 |
| 754 | 147.72 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 762 | 147.74 | humidity | 50.0 | 90 | < th | dose independent | sin | 7 | NA |
| 763 | 147.74 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 2 |
| 783 | 147.80 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 20 |
| 784 | 147.80 | radiation | 30.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 789 | 147.81 | wind | 1.0 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 792 | 147.82 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 4 |
| 798 | 147.82 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 24 | 4 |
| 811 | 147.85 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 15 |
| 815 | 147.86 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 18 |
| 818 | 147.87 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 825 | 147.89 | radiation | 1.0 | 90 | > th | dose independent | sin | 9 | NA |
| 826 | 147.89 | humidity | 80.0 | 10 | < th | dose independent | rect. | 22 | 2 |
| 828 | 147.89 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 12 |
| 839 | 147.91 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 2 |
| 843 | 147.91 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 848 | 147.91 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 22 | 2 |
| 849 | 147.91 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 24 | 2 |
| 856 | 147.91 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 861 | 147.94 | radiation | 40.0 | 90 | < th | dose independent | sin | 15 | NA |
| 864 | 147.95 | radiation | 40.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 876 | 147.95 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 877 | 147.95 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 879 | 147.95 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 20 | 12 |
| 886 | 147.97 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 10 | 22 |
| 891 | 147.98 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 12 | 2 |
| 898 | 147.99 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 10 |
| 925 | 148.06 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 930 | 148.07 | temperature | 10.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 932 | 148.07 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 934 | 148.07 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 940 | 148.07 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 942 | 148.07 | radiation | 20.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 948 | 148.07 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 952 | 148.07 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 956 | 148.08 | radiation | 1.0 | 90 | < th | dose independent | sin | 9 | NA |
| 957 | 148.08 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 960 | 148.08 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 964 | 148.08 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 969 | 148.08 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 970 | 148.08 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 974 | 148.08 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 985 | 148.10 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 14 |
| 990 | 148.10 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 14 |