Os04g0477500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycosyl transferase, family 17 protein.
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Os04g0477500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycosyl transferase, family 17 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.99 | 0.325 | 9.29 | 0.383 | 2.24 | 0.504 | 0.0724 | -1.24 | -0.189 | 5.85 | 10.32 | 1359 | -- | -- |
| 50.71 | 0.332 | 9.27 | 0.508 | 2.3 | 0.501 | 0.0881 | -- | -0.156 | 5.89 | 10.25 | 1358 | -- | -- |
| 47.98 | 0.323 | 9.29 | 0.38 | 2.24 | 0.506 | -- | -1.25 | -0.189 | 5.85 | 10 | 1359 | -- | -- |
| 50.44 | 0.331 | 9.26 | 0.551 | 2.22 | 0.467 | -- | -- | -0.108 | 5.88 | 10.01 | 1364 | -- | -- |
| 305.74 | 0.814 | 9.32 | 0.442 | -- | 0.547 | -- | -1.09 | -0.153 | -- | 21.24 | 1384 | -- | -- |
| 56.63 | 0.353 | 9.23 | 0.718 | 2.24 | -- | 0.103 | -- | 0.0203 | 5.73 | -- | -- | -- | -- |
| 56.65 | 0.352 | 9.23 | 0.718 | 2.24 | -- | -- | -- | 0.0199 | 5.73 | -- | -- | -- | -- |
| 304.85 | 0.813 | 9.28 | 0.711 | -- | 0.456 | -- | -- | 0.0179 | -- | 51.57 | 1386 | -- | -- |
| 59.11 | 0.358 | 9.26 | -- | 2.2 | 0.548 | -- | -- | -0.131 | 5.78 | 10.24 | 1376 | -- | -- |
| 316.57 | 0.831 | 9.27 | 0.788 | -- | -- | -- | -- | 0.0729 | -- | -- | -- | -- | -- |
| 70.25 | 0.392 | 9.25 | -- | 2.25 | -- | -- | -- | -0.0601 | 5.72 | -- | -- | -- | -- |
| 317.32 | 0.83 | 9.3 | -- | -- | 0.695 | -- | -- | -0.116 | -- | 10.3 | 1425 | -- | -- |
| 332.97 | 0.852 | 9.29 | -- | -- | -- | -- | -- | -0.0146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.80 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 2 | 46.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 3 | 46.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 7 | 46.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 8 | 46.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 13 | 46.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 22 | 46.68 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 23 | 46.69 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 4 |
| 28 | 46.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 29 | 46.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 33 | 46.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 36 | 46.87 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 5 |
| 39 | 46.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 46 | 47.15 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 1 |
| 94 | 47.48 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 7 |
| 108 | 47.63 | humidity | 60 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 144 | 47.91 | radiation | 10 | 1440 | > th | dose independent | sin | 4 | NA |
| 177 | 48.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 183 | 48.16 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 209 | 48.38 | wind | 1 | 90 | < th | dose independent | rect. | 23 | 3 |
| 232 | 48.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 261 | 48.56 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 292 | 48.64 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 364 | 48.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 412 | 48.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 432 | 48.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 442 | 48.82 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 449 | 48.83 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 503 | 48.98 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 511 | 48.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 526 | 49.02 | wind | 1 | 90 | < th | dose dependent | rect. | 23 | 3 |
| 628 | 49.20 | radiation | 20 | 1440 | < th | dose dependent | rect. | 1 | 15 |
| 656 | 49.23 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 665 | 49.25 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 678 | 49.28 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 714 | 49.33 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 768 | 49.35 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 852 | 49.42 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 14 |
| 995 | 49.51 | radiation | 10 | 1440 | > th | dose dependent | rect. | 11 | 23 |