Os04g0467800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0467800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Nucleic acid-binding, OB-fold domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.67 | 0.324 | 10.1 | 0.796 | 1.32 | 0.55 | 0.126 | -1.16 | 0.424 | 20.9 | 19.99 | 4301 | -- | -- |
| 49.63 | 0.328 | 10.1 | 0.791 | 1.32 | 0.537 | 0.109 | -- | 0.427 | 20.9 | 20 | 4308 | -- | -- |
| 47.73 | 0.322 | 10.1 | 0.794 | 1.32 | 0.549 | -- | -1.17 | 0.424 | 20.9 | 19.98 | 4299 | -- | -- |
| 49.67 | 0.328 | 10.1 | 0.807 | 1.31 | 0.53 | -- | -- | 0.437 | 20.9 | 20 | 4334 | -- | -- |
| 128.31 | 0.53 | 10 | 0.893 | -- | 0.566 | -- | 0.112 | 0.382 | -- | 19.98 | 4299 | -- | -- |
| 55.69 | 0.35 | 10.1 | 0.888 | 1.31 | -- | 0.142 | -- | 0.401 | 20.9 | -- | -- | -- | -- |
| 55.76 | 0.35 | 10.1 | 0.884 | 1.31 | -- | -- | -- | 0.401 | 20.9 | -- | -- | -- | -- |
| 128.38 | 0.53 | 10 | 0.886 | -- | 0.567 | -- | -- | 0.381 | -- | 19.98 | 4299 | -- | -- |
| 59.85 | 0.36 | 10.1 | -- | 1.29 | 0.675 | -- | -- | 0.369 | 21.1 | 30 | 29666 | -- | -- |
| 153.92 | 0.58 | 10 | 0.883 | -- | -- | -- | -- | 0.392 | -- | -- | -- | -- | -- |
| 76.34 | 0.409 | 10.1 | -- | 1.31 | -- | -- | -- | 0.303 | 20.9 | -- | -- | -- | -- |
| 149.08 | 0.571 | 10.1 | -- | -- | 0.566 | -- | -- | 0.283 | -- | 19.98 | 4299 | -- | -- |
| 174.51 | 0.617 | 10.1 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.06 | radiation | 30 | 30 | < th | dose dependent | sin | 10 | NA |
| 12 | 46.03 | radiation | 1 | 30 | > th | dose dependent | sin | 10 | NA |
| 30 | 47.18 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 32 | 47.25 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 48 | 47.39 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 49 | 47.39 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 52 | 47.41 | humidity | 90 | 90 | < th | dose independent | rect. | 6 | 3 |
| 59 | 47.52 | radiation | 1 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 61 | 47.53 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 81 | 47.64 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 83 | 47.68 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 11 |
| 152 | 47.69 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 158 | 47.70 | radiation | 20 | 4320 | < th | dose independent | no | NA | NA |
| 159 | 47.70 | radiation | 20 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 216 | 47.71 | radiation | 20 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 219 | 47.72 | radiation | 20 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 228 | 47.74 | radiation | 20 | 4320 | < th | dose independent | sin | 2 | NA |
| 232 | 47.75 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 268 | 47.79 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 294 | 47.83 | radiation | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 303 | 47.84 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 422 | 47.89 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 435 | 47.90 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 455 | 47.94 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 21 |
| 493 | 47.99 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 494 | 47.99 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 11 |
| 535 | 48.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 555 | 48.04 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 562 | 48.05 | radiation | 1 | 4320 | > th | dose dependent | rect. | 15 | 21 |
| 616 | 48.13 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 617 | 48.13 | radiation | 40 | 4320 | < th | dose dependent | rect. | 6 | 6 |
| 618 | 48.13 | radiation | 40 | 4320 | < th | dose dependent | rect. | 2 | 10 |
| 622 | 48.14 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 633 | 48.14 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 17 |
| 679 | 48.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 685 | 48.18 | radiation | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 698 | 48.20 | radiation | 40 | 4320 | < th | dose dependent | sin | 6 | NA |
| 765 | 48.25 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 5 |
| 784 | 48.26 | radiation | 1 | 4320 | > th | dose dependent | rect. | 5 | 7 |
| 792 | 48.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 832 | 48.32 | radiation | 40 | 4320 | < th | dose dependent | sin | 11 | NA |
| 833 | 48.32 | radiation | 20 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 840 | 48.33 | radiation | 1 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 845 | 48.34 | radiation | 30 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 895 | 48.38 | radiation | 30 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 903 | 48.38 | radiation | 40 | 4320 | < th | dose dependent | rect. | 5 | 11 |
| 920 | 48.38 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 21 |
| 963 | 48.40 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 991 | 48.41 | radiation | 30 | 4320 | > th | dose independent | rect. | 11 | 23 |