BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0467800 Os04g0467800|AK099483
         (430 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06310.1  | chr5:1928468-1930795 FORWARD LENGTH=455            192   3e-49
AT2G05210.1  | chr2:1891814-1894196 FORWARD LENGTH=468            164   6e-41

>AT5G06310.1 | chr5:1928468-1930795 FORWARD LENGTH=455
          Length = 454

 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 214/452 (47%), Gaps = 61/452 (13%)

Query: 29  YVYLPIADALKAPGARVCLFAAVSEIGAAVRSRGTDFTLTLRIVD-HSRASAISVTFFAD 87
           Y +L I DA KA    V L   + E+G    S G+D + TL+IVD     S + V F A 
Sbjct: 9   YKFLRIQDAFKALHLHVNLIGVIVELGF---SNGSDCSCTLKIVDPWYSGSGLPVKFVAR 65

Query: 88  NTALLPCVRSSGDVISLHNVVITMHHGEFFVTYNKRFSS-FALFEGKVSTGCIPYQHSMK 146
               LP V S GD+I L  V I + + +     N+  SS FALF GK S   IPYQ S K
Sbjct: 66  TIRDLPRVESIGDIILLSRVKIVLINRKITALCNETTSSSFALFNGKHSVDSIPYQSSPK 125

Query: 147 YHGSKHDSEFLTHLRMWIVYNP---------------PGDLDNESVS------------- 178
           +   + D  FL++LR W++                   G+  N S               
Sbjct: 126 FLMREQDKNFLSNLREWMITYKFEDGSCCFTSLKDIKEGECSNLSCQIVHISKVYKDRWY 185

Query: 179 ---------PP----------PLHLEGAPLPREVLCTLPCVGSVLRVFSNRFF-KEMLH- 217
                    PP          PL +E   LP  +L   P  GSVLR+  +R   K+ +H 
Sbjct: 186 LFVWDGTEMPPCNILVKSERLPLCVEPEMLPTYMLRKFPTFGSVLRIIVDRVSEKQAIHC 245

Query: 218 LQKGIYWARFCNMTCKQQFGMWKGILLPSSRVRLLSNEDGSVADRLKLFDSRIATQIHRQ 277
           LQ G +  +  N+  +   G+W     PS++++   + +       ++   + + + +  
Sbjct: 246 LQPGQH-VKLLNLFFQVNMGLWNATFTPSTKMQYTMSREMEAFSPQRMCGEKFSPRWNPI 304

Query: 278 PMASLPNASDIADVEYERAGYTTLMESLTHGEVTHKFKTLVRVVAAYPRGASHLCSLLAG 337
                 + S+I  V ++ A + +LM+ LT+  VT KF+ +VR +  YPR    L  +  G
Sbjct: 305 ARCISRSHSEITGVAHDDAPFVSLMDILTYHNVTAKFRCVVRFIQVYPRDVRKLRDI-NG 363

Query: 338 NCCLRLTLEDPTARIHAYIHKDDGAKFFGGFLT-AEAVIRKMNKLLGIPEDTEEGAPSNR 396
           N  L   LED TARIHA ++ D+G KFFG   +  EA+++K+N+LLG     EE     R
Sbjct: 364 NIKLVAILEDATARIHASLYADEGEKFFGCDESDEEALVKKLNRLLG----GEEMEKVPR 419

Query: 397 NPPWIWCCLKSYRLDKNDPWGSRRYRIFGTEI 428
           NPPW+ CCL S+   K D W SRR+RIF T I
Sbjct: 420 NPPWVQCCLFSFYKHKMDQWESRRFRIFDTWI 451



>AT2G05210.1 | chr2:1891814-1894196 FORWARD LENGTH=468
          Length = 467

 Score =  164 bits (416), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 214/465 (46%), Gaps = 78/465 (16%)

Query: 32  LPIADALKAPGARVCLFAAVSEIGAAVRSRGTDFTLTLRIVDHSRAS-AISVTFFADNTA 90
           + I DA+K    +V L   V E     + R  D+  TLRI+D +  S  ++V  F+    
Sbjct: 11  IKIKDAIKLINQQVSLIGIVLEQREPKQCRNNDWICTLRIIDDTYPSPGLTVNVFSKTLE 70

Query: 91  LLPCVRSSGDVISLHNVVI-TMHHGEFFVTYNKRF-SSFALFEG---------------- 132
            LP +++  D+I    + + T   GE       R+ SSFALFEG                
Sbjct: 71  QLPQIKNHDDMILFTRIKMQTFDSGERVNAACSRWVSSFALFEGVDFVCYQCSTNFHEEE 130

Query: 133 -----------KVSTGC---IPYQHSMKYHGSKHDSEFLTHLR----------------- 161
                      KV  GC   I    S+ Y  +K  SE  + LR                 
Sbjct: 131 ALYKSAMDDLRKVFAGCSQVIKAMQSISYR-TKPCSEVFSFLREIKIGKRFDLVCRILHA 189

Query: 162 --------MWIVYN-PPGDL------DNESVSPPPLHLEGAPLPREVLCTLPCVGSVLRV 206
                   +W   + PP  +      ++++ S   +H     L R+VL + P VG++LRV
Sbjct: 190 DEDTSAVFVWDGTDAPPASILAKRSEEDKAFSSLSVH---TLLSRDVLLSFPTVGTILRV 246

Query: 207 -FSNRFFKEMLHLQKGIYWARFCNMTCKQQFGMWKGILLPSSRVRLLSNEDGSVADRLKL 265
             S+  F  +    K   W +  ++ C+   G W   +  S++V  L+ +D  V   +++
Sbjct: 247 HLSSHLFYRV----KPGDWVKLYHLLCEVDRGSWVIKVTSSTKVHHLAQDDRLVEKIMRI 302

Query: 266 FDSRIATQIHRQPMASLPNASDIADVEYERAGYTTLMESLTHGEVTHKFKTLVRVVAAYP 325
           +D R+++++        P+   + + +   A + TLM+ +T  +VT K++ +VRVVAAYP
Sbjct: 303 YDKRLSSKLGHISFWCFPSPPGLTETDDNCAPFVTLMDIITFPKVTCKYRCIVRVVAAYP 362

Query: 326 RGASHLCS-LLAGNCCLRLTLEDPTARIHAYIHKDDGAKFFG-GFLTAEAVIRKMNKLLG 383
                 CS     +  + LTLED TA + A++   D   F+G GF   E + +K N LLG
Sbjct: 363 WQVEDFCSDENRRHHQVLLTLEDSTATLEAFLCNKDAEYFWGLGFQDTETLRKKRNWLLG 422

Query: 384 IPEDTEEGAPSNRNPPWIWCCLKSYRLDKNDPWGSRRYRIFGTEI 428
           I E +   AP  RNPPWI CC+ SY  +K DPW +R YRIFGT +
Sbjct: 423 IRESSNFVAP--RNPPWIECCILSYYTNKADPWNTRLYRIFGTRL 465



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,882,357
Number of extensions: 424226
Number of successful extensions: 843
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 3
Length of query: 430
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 329
Effective length of database: 8,337,553
Effective search space: 2743054937
Effective search space used: 2743054937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)